View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_high_20 (Length: 276)
Name: NF8566_high_20
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 1483446 - 1483188
Alignment:
| Q |
1 |
tttataagctttgaaaacaggtccttttattatatatttcccttttaagatcttctctgagcttcttttcttaaacttccaatagaagcaccaaaacaat |
100 |
Q |
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| T |
1483446 |
tttataagctttgaaaacaggtccttttattatatatttcccttttaagatcttctctgagcttcttttcttaaacttccaatagaagcaccaaaacaat |
1483347 |
T |
|
| Q |
101 |
tttattccggaaaacctcattattcattaaatagctcttttaacatgtttttagaccagtgggtgcattcttgttaactttcaaatctagaagtttaaga |
200 |
Q |
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| T |
1483346 |
tttattccggaaaacctcattattcattaaatagctcttttaacatgtttttagaccagtgggtacattcttgttaactttcaaatctagaagtttaaga |
1483247 |
T |
|
| Q |
201 |
tatgcatgtattacaacatactgacaaggtttgatagtagaaaaaactcctacagaagg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1483246 |
tatgcatgtattacaacatactgacaaggtttgatagtagaaaaaactcctacagaagg |
1483188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1443230 - 1443124
Alignment:
| Q |
1 |
tttataagctttgaaaacaggtccttttattatatatttcccttttaagatcttctctgagcttcttttcttaaacttccaatagaagcaccaaaacaat |
100 |
Q |
| |
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|||||||| |||||||||| || ||| ||||||||||||| |||| |||| ||| ||| |||||||||||||||||||| ||| ||||| |||||||| |
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| T |
1443230 |
tttataaggtttgaaaacaagtgcttctattatatatttctcttt-aagaacttttctaagcttcttttcttaaacttcagataaaagcagtaaaacaat |
1443132 |
T |
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| Q |
101 |
tttattcc |
108 |
Q |
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|||||||| |
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| T |
1443131 |
tttattcc |
1443124 |
T |
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