View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8566_high_22 (Length: 247)
Name: NF8566_high_22
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 50460440 - 50460669
Alignment:
| Q |
1 |
tctagttgatgtaggaaacaataattacattatttctctctcaaaggctaattttttgcctaatggtatcgattttggaagaccaacagggagattcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50460440 |
tctagttgatgtaggaaacaataattacattatttctctctcaaaggctaattttttgcctaatggtatcgattttggaagaccaacagggagattcacc |
50460539 |
T |
|
| Q |
101 |
aatggaagaaccatagttgacatcattggtaagattttattagtaataaaattatttcccttatttcattctacttgatagtcactatttttatataacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50460540 |
aatggaagaaccatagttgacatcattggtaagattttattagtaataaaattatttcccttatttcattctacttgatagtcactatttttatataacg |
50460639 |
T |
|
| Q |
201 |
agtcttatattcttgcaccaccgcaactga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
50460640 |
agtcttatattcttgcaccaccgcaactga |
50460669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University