View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8566_high_28 (Length: 227)
Name: NF8566_high_28
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 27876401 - 27876611
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27876401 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc |
27876500 |
T |
|
| Q |
112 |
ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27876501 |
ataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgcagagaa |
27876600 |
T |
|
| Q |
212 |
gaataatctac |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
27876601 |
gaataatctac |
27876611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 8481391 - 8481557
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
8481391 |
gctcactttgcagttcattttctgcaaagactacatctctgccaacaacaagcttgcgaatagtgggatcccacaagcgataccccttcatcttgtcagt |
8481490 |
T |
|
| Q |
112 |
ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatc |
178 |
Q |
| |
|
|||||||||||| |||||||| | |||||| | || ||||||||| ||||||||| |||||||| |
|
|
| T |
8481491 |
ataacccaagaatatacattttttagactttggatctgtctttgttctgtcttgggagatgtacatc |
8481557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 18148910 - 18148961
Alignment:
| Q |
26 |
tcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgg |
77 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
18148910 |
tcattttctacaaagactacatccatgataacaacaaccttgcgggtagtgg |
18148961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 26978574 - 26978602
Alignment:
| Q |
16 |
actttgcagttcattttctgcaaagacta |
44 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26978574 |
actttgcagttcattttctgcaaagacta |
26978602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 48699513 - 48699723
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48699513 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc |
48699612 |
T |
|
| Q |
112 |
ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48699613 |
ataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgcagagaa |
48699712 |
T |
|
| Q |
212 |
gaataatctac |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
48699713 |
gaataatctac |
48699723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 30947875 - 30948085
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30947875 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc |
30947974 |
T |
|
| Q |
112 |
ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
30947975 |
ataacccaagaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaa |
30948074 |
T |
|
| Q |
212 |
gaataatctac |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
30948075 |
gaataatctac |
30948085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 42268524 - 42268318
Alignment:
| Q |
16 |
actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagcataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42268524 |
actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataa |
42268425 |
T |
|
| Q |
116 |
cccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaagaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
42268424 |
cccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggacaaccaaacacatgcagagaagaat |
42268325 |
T |
|
| Q |
216 |
aatctac |
222 |
Q |
| |
|
||||||| |
|
|
| T |
42268324 |
aatctac |
42268318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 2001504 - 2001295
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacat--ccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| | ||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
2001504 |
gctcactttgcagttcattttctgcaaagactacatatctctgctaacaacaagcttgtgagcagtgggatcccacaagcgataccccttcacgttgtca |
2001405 |
T |
|
| Q |
110 |
gcataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagag |
209 |
Q |
| |
|
|||||||||||||| ||||| || || |||||| | || | |||||||||||||||||||||| ||| |||||||| ||| || ||||||| || | |
|
|
| T |
2001404 |
gcataacccaagaatatacaatttctagactttggatctagttttgttctttcttgggagttgttcattgcgtacacaatacatccgaacacatataagg |
2001305 |
T |
|
| Q |
210 |
aagaataatc |
219 |
Q |
| |
|
|||||||||| |
|
|
| T |
2001304 |
aagaataatc |
2001295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 41721035 - 41720825
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41721035 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc |
41720936 |
T |
|
| Q |
112 |
ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
41720935 |
ataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaa |
41720836 |
T |
|
| Q |
212 |
gaataatctac |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
41720835 |
gaataatctac |
41720825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 34354635 - 34354425
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34354635 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaataaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc |
34354536 |
T |
|
| Q |
112 |
ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa |
211 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354535 |
ataacccaagaagatacattttctgaactttgggtccaacttcgttctgtcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa |
34354436 |
T |
|
| Q |
212 |
gaataatctac |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
34354435 |
gaataatctac |
34354425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 5820971 - 5821177
Alignment:
| Q |
16 |
actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagcataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5820971 |
actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataa |
5821070 |
T |
|
| Q |
116 |
cccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaagaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
5821071 |
cccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggacaaccaaacacatgcagagaagaat |
5821170 |
T |
|
| Q |
216 |
aatctac |
222 |
Q |
| |
|
||||||| |
|
|
| T |
5821171 |
aatctac |
5821177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 2814955 - 2815165
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
2814955 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggaccccacaggcgataccccttaacattgtcagc |
2815054 |
T |
|
| Q |
112 |
ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa |
211 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2815055 |
ataacccaagaagatacatttcttagactttgggtccaactttgttctttcttgagagttgtacatcacatacacaggacaaccaaacacatgtagagaa |
2815154 |
T |
|
| Q |
212 |
gaataatctac |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
2815155 |
gaataatctac |
2815165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 42587576 - 42587369
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||||||| ||||||||| || || |||||||| |
|
|
| T |
42587576 |
gctcactttgcagttcattttctgcaaagactacatctctgctaacaacaagcttgtgagcagtgggatcccacaagcgataccctttcacgttgtcagc |
42587477 |
T |
|
| Q |
112 |
ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa |
211 |
Q |
| |
|
|||||||||||| |||||||| || |||||| | || | ||||||||||||||||||||||||||| ||||||||| ||| || |||||||||| ||| |
|
|
| T |
42587476 |
ataacccaagaatatacattttctagactttggatctagctttgttctttcttgggagttgtacattgcgtacacagtacatccgaacacatgtaaggaa |
42587377 |
T |
|
| Q |
212 |
gaataatc |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
42587376 |
gaataatc |
42587369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 828100 - 827894
Alignment:
| Q |
16 |
actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagcataa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
828100 |
actttgcagttcattttctgcaaagactagatccctgctaacaacaaccttgcgggtagtgggatcccacaggcgataccccttaacattgtcagcataa |
828001 |
T |
|
| Q |
116 |
cccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaagaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
828000 |
cccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgcagagaagaat |
827901 |
T |
|
| Q |
216 |
aatctac |
222 |
Q |
| |
|
||||||| |
|
|
| T |
827900 |
aatctac |
827894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 9441787 - 9441994
Alignment:
| Q |
16 |
actttgcagttcattttct-gcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagcata |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9441787 |
actttgcagttcattttcttgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcata |
9441886 |
T |
|
| Q |
115 |
acccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaagaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
9441887 |
acccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggacaaccaaacacatgcagagaagaa |
9441986 |
T |
|
| Q |
215 |
taatctac |
222 |
Q |
| |
|
|||||||| |
|
|
| T |
9441987 |
taatctac |
9441994 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 24596180 - 24596387
Alignment:
| Q |
12 |
gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||| ||||||||| || || |||||||| |
|
|
| T |
24596180 |
gctcactttgcagttcattttctgcaaagactacatctctgctaacaacaagcttgtgagcagtgggatcccataagcgataccctttcacgttgtcagc |
24596279 |
T |
|
| Q |
112 |
ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa |
211 |
Q |
| |
|
|||||||||||| |||||||| || |||||| | || | ||||||||||||||||||||||||||| ||||||||| ||| || |||||||||| ||| |
|
|
| T |
24596280 |
ataacccaagaatatacattttctagactttggatctagctttgttctttcttgggagttgtacattgcgtacacagtacatccgaacacatgtaaggaa |
24596379 |
T |
|
| Q |
212 |
gaataatc |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
24596380 |
gaataatc |
24596387 |
T |
|
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