View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_high_3 (Length: 581)
Name: NF8566_high_3
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 572
Target Start/End: Original strand, 12922630 - 12923185
Alignment:
| Q |
19 |
tggtgttggggagtcaaatttgctttagaaccagggcgttagctagtgcaaagtaacagccattcatcttccgaggtttaagcaaaggaacagaaacaat |
118 |
Q |
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| T |
12922630 |
tggtgttggggagtcaaatttgctttagaaccagggcgttagctagtgcaaagtaacagccattcatcttccgaggtttaagcaaaggaacagaaacaat |
12922729 |
T |
|
| Q |
119 |
cagttaaagtagatagacaccctacttatgtctcccagttctaaaacccaaacataacatagtagtgtcctaaaataaattttgctgatacattatattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12922730 |
cagttaaagtagatagacaccctacttatgtctcccagttcttaaacccaaacataacatagtagtgtcctaaaataaattttgctgataccttatattt |
12922829 |
T |
|
| Q |
219 |
tgctttaagtaaagctaattctgaatgtcctatttccacatgcatttgaattaaaaagtacattcatgtgctagtggcaagccttgtctaactccctgaa |
318 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
12922830 |
tgctttaagtaaagctaattctgaatgtcatatttccacatgcatttgaattaaaaagtacattcatgtactagtggcaggccttgtctaactccctgaa |
12922929 |
T |
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| Q |
319 |
gttacaagttttaccagcagggtgaacaagtgaaaaa--agagtcattttccaaatactggtatcagtaaatcttattatatttcgagatggatcagtga |
416 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12922930 |
gttacaagttttaccagcagggtgaacaagtgaaaaaagagagtcattttccaaatactggtatcagtaaatcttattatattttgagatggatcagtga |
12923029 |
T |
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| Q |
417 |
atcttataaataacaaatagctttaatttcactctctgtaaaaggataaaacctataaaatttaatcagtatcactcttctatcagcattctttgccatt |
516 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12923030 |
atcttataaataacaaatatctttaatttcactctctgtaaaaggataaaacctataaaatttaatcagtgtcactcttctatcagcattctttgccatt |
12923129 |
T |
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| Q |
517 |
ctctcttgtaacgtgttaggtaacagtctctatggcattagatgaagcagaataat |
572 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
12923130 |
ctctcttgtaacgtgttaggtaacagtctctgtggcattagatgaagcaggataat |
12923185 |
T |
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