View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8566_low_1 (Length: 986)

Name: NF8566_low_1
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8566_low_1
NF8566_low_1
[»] chr7 (6 HSPs)
chr7 (318-819)||(22684888-22685373)
chr7 (394-819)||(22697011-22697448)
chr7 (19-215)||(22685504-22685700)
chr7 (19-72)||(22697484-22697537)
chr7 (164-215)||(29979942-29979993)
chr7 (139-215)||(21925125-21925197)
[»] chr6 (5 HSPs)
chr6 (820-968)||(24491715-24491863)
chr6 (820-968)||(24495273-24495421)
chr6 (868-968)||(2810271-2810371)
chr6 (92-219)||(4593381-4593507)
chr6 (92-214)||(2604380-2604497)
[»] chr3 (4 HSPs)
chr3 (820-968)||(24359028-24359176)
chr3 (127-215)||(1346719-1346812)
chr3 (120-215)||(50653561-50653660)
chr3 (178-215)||(27456821-27456858)
[»] scaffold0003 (1 HSPs)
scaffold0003 (819-968)||(86774-86922)
[»] chr5 (4 HSPs)
chr5 (820-968)||(18556573-18556720)
chr5 (120-215)||(31911762-31911860)
chr5 (92-215)||(7959558-7959679)
chr5 (172-215)||(33093413-33093456)
[»] chr4 (2 HSPs)
chr4 (99-215)||(51880454-51880571)
chr4 (143-205)||(54721844-54721904)
[»] chr1 (4 HSPs)
chr1 (136-219)||(19020074-19020156)
chr1 (150-215)||(42066888-42066953)
chr1 (142-205)||(58647-58709)
chr1 (151-215)||(6132896-6132958)
[»] chr8 (3 HSPs)
chr8 (169-219)||(5912209-5912259)
chr8 (175-215)||(33023944-33023984)
chr8 (172-215)||(35585051-35585094)
[»] chr2 (2 HSPs)
chr2 (142-205)||(44942119-44942182)
chr2 (139-212)||(42962696-42962767)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 318 - 819
Target Start/End: Complemental strand, 22685373 - 22684888
Alignment:
Q  318 gggcttaggaaggtctccctcctcgctctgcctcagatacggcctttgagttacagtgcacaacaactattgcaaatgcaatattgtg--attttatagg 415  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  22685373 gggcttaggaaggtccccctcctcgctctgcctcagatacggccct-gagttacagtgcacaacaacaattgcaaatgcaatattgtgtgattttatagg 22685275  T
Q  416 tcttcacaatggcatcacaactgtaattgtagccgcatttctctacattttaccgcaatacagatgtttgcaacataaccacaaatgcgacctcaatcgc 515  Q
    | | ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  22685274 tatccacaatgccatcacaactgtaattgtagccgcatttgtctacattttaccgcaatacagatgttcacaacataaccacaaatacgacctcaatcgc 22685175  T
Q  516 agtttaaaaccatgatgctactcattaaattttgcataattagaggaaccaaccttcaacagaagttttttgacattaataattactannnnnnnnnnca 615  Q
    |||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||                 |||||||| |||||          ||    
T  22685174 agtttaaaaccatgatgctattcattaattttggcataattaaaggaaccaaccttc-----------------attaataactactactttttttttca 22685092  T
Q  616 cagtcaaatattagtgcagttttactgaagaacaattctcattaattttattttcttgtgcagttttgctattagtgttattatgtacaccagtgtagga 715  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22685091 tagtcaaatattagtgcagttttactgaagaacaattctcattaattttattttcttgtgcagttttgctattagtgttattatgtacaccagtgtagga 22684992  T
Q  716 gcagttggctatttaatgtttggtgacaaaactgaatcccagtttaccttaaacatgcccaaaaagttatatgcatcacagatagcaatttggacaactg 815  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22684991 gcagttggctatttaatgtttggtgacaaaattgaatcccagtttaccttaaacatgcccaaagagttatatgcatcacagatagcaatttggacaactg 22684892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 394 - 819
Target Start/End: Complemental strand, 22697448 - 22697011
Alignment:
Q  394 tgcaatattgtgattttataggtcttcacaatggcatcacaactgtaattgtagccgcatttctctacattttaccgcaatacagatgtttgcaa----- 488  Q
    |||||||||  |||||||| ||||| || |||||||||||||||| |||||| ||||||  | ||| ||||||||||||||| ||| ||| |||          
T  22697448 tgcaatattacgattttattggtctccaaaatggcatcacaactgcaattgtggccgcaaatgtctgcattttaccgcaatatagaggttcgcacttcgc 22697349  T
Q  489 --cataaccacaaatgcgacctcaatcgcagtttaaaaccatgatgctactcattaaattttgcataattagaggaaccaaccttcaacagaagtt-ttt 585  Q
      ||||| |||||||| |||||| | ||   ||| ||||||||||||| |||||||| ||| |||||| || |||||  ||||||||||||||||| |||    
T  22697348 agcataagcacaaatgtgacctctaccgtgattttaaaccatgatgctgctcattaattttggcataactaaaggaataaaccttcaacagaagttgttt 22697249  T
Q  586 tgacattaataattactannnnnnnnnn----cacagtcaaatattagtgcagttttactgaagaacaattctcattaattttattttcttgtgcagttt 681  Q
    |||||||||||| |||||              || |||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||    
T  22697248 tgacattaataactactatattttttttttgtcatagtcaaatattagtgcagttttgctcaagagcaattctcattcattttattttcttgtgcagttt 22697149  T
Q  682 tgctattagtgttattatgtacaccagtgtaggagcagttggctatttaatgtttggtgacaaaactgaatcccagtttaccttaaacatgcccaaaaag 781  Q
    |||| |  || || ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22697148 tgctttctgtcttgttatgtacatcagtgtaggagcagttggctatttattgtttggtgacaaaactgaatcccagtttaccttaaacatgcccaaagag 22697049  T
Q  782 ttatatgcatcacagatagcaatttggacaactgtaag 819  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  22697048 ttatatgcatcaaagatagcaacttggacaactgtaag 22697011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 22685700 - 22685504
Alignment:
Q  19 aaagtaaaatattgcaattgttgcaagaaaataagtgcttgatattctactcataataagttacggtagggctgtttctaagattttggtggcctgcggg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  22685700 aaagtaaaatattgcaattgttgcaagaaaataagtgcttgatattctactcatgataagttacggtagggctgtttctaagattttggtggcctgcgag 22685601  T
Q  119 tgaacctgcaatttgaaccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
     |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22685600 cgaacctacaatttaagccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagttattatta 22685504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 22697537 - 22697484
Alignment:
Q  19 aaagtaaaatattgcaattgttgcaagaaaataagtgcttgatattctactcat 72  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||    
T  22697537 aaagtaaaatatggcaattgttgtaagaaaataagtggttgatattctattcat 22697484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 29979993 - 29979942
Alignment:
Q  164 ttgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    |||| |||||| |||||||||||||| || |||||||||||| |||||||||    
T  29979993 ttgaattcctagagtgtgaaaataatatttttgaagatgataatttttatta 29979942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 21925197 - 21925125
Alignment:
Q  139 taactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    |||||||||||||||||||||  | |||  || ||||||||||||  ||||||| |||||| |||||||||||||||    
T  21925197 taactaataagtatataaaaa--atttgcatttctaaagtgtgaa--taattttcttgaaggtgatagtttttatta 21925125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 8e-76; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 820 - 968
Target Start/End: Complemental strand, 24491863 - 24491715
Alignment:
Q  820 tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat 919  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24491863 tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat 24491764  T
Q  920 tgcttcctacagctatggtttgactttctctaatcaattacagtgtgat 968  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24491763 tgcttcctacagctatggtttgactttctctaatcaattacagtgtgat 24491715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 820 - 968
Target Start/End: Complemental strand, 24495421 - 24495273
Alignment:
Q  820 tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat 919  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24495421 tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat 24495322  T
Q  920 tgcttcctacagctatggtttgactttctctaatcaattacagtgtgat 968  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24495321 tgcttcctacagctatggtttgactttctctaatcaattacagtgtgat 24495273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 868 - 968
Target Start/End: Complemental strand, 2810371 - 2810271
Alignment:
Q  868 tcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtga 967  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2810371 tcacaaggtatattggtacaatatatagaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtga 2810272  T
Q  968 t 968  Q
    |    
T  2810271 t 2810271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 4593507 - 4593381
Alignment:
Q  92 gtttctaagattttggtggcctgcgggtgaacctgcaatttgaaccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattt 191  Q
    |||||| |||||  |||||||| ||| ||||||| || ||||  |||||||||||||||| | ||||| ||||||| |||||||||||| ||||||||||    
T  4593507 gtttctgagattcaggtggcctacggatgaacctacagtttgggccctaactaataagtacaaaaaaa-aaattgaattcctaaagtgtaaaaataattt 4593409  T
Q  192 tattgaagatgatagtttttattatgtt 219  Q
    | ||||||||||||||||||||||||||    
T  4593408 tcttgaagatgatagtttttattatgtt 4593381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 2604380 - 2604497
Alignment:
Q  92 gtttctaagattttggtggcctgcgggtgaacctgcaatttgaaccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattt 191  Q
    |||| ||| |||||||||||||  || |||| ||  ||||||||||||||||| |||||||||||||  || |||| || || |||| ||   |||||||    
T  2604380 gtttttaaaattttggtggcctatggttgaatctataatttgaaccctaactagtaagtatataaaa--aatttgagtt-cttaagtatg--cataattt 2604474  T
Q  192 tattgaagatgatagtttttatt 214  Q
    ||||||| |||||||||||||||    
T  2604475 tattgaaaatgatagtttttatt 2604497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 8e-76; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 820 - 968
Target Start/End: Complemental strand, 24359176 - 24359028
Alignment:
Q  820 tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat 919  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24359176 tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat 24359077  T
Q  920 tgcttcctacagctatggtttgactttctctaatcaattacagtgtgat 968  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24359076 tgcttcctacagctatggtttgactttctctaatcaattacagtgtgat 24359028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 1346812 - 1346719
Alignment:
Q  127 caatttgaaccctaactaataagtatata----aaaagaaa-ttgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    ||||||||||||||| |||||||||||||    |||||||| |||| |||||||||||| ||||||||||| || |||||||||||||||||||    
T  1346812 caatttgaaccctaattaataagtatatataaaaaaagaaaattgaattcctaaagtgtaaaaataattttcttaaagatgatagtttttatta 1346719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 50653660 - 50653561
Alignment:
Q  120 gaacctgcaatttgaaccctaactaataagtatataaaaagaa----attgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    |||||| |||||| |||| ||||||||||||||||| ||| ||    ||||| || |||||||| |||||||||||| || ||||| |||||||||||||    
T  50653660 gaacctacaatttaaaccataactaataagtatatataaaaaataaaattgaatttctaaagtgcgaaaataattttcttaaagattatagtttttatta 50653561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 27456858 - 27456821
Alignment:
Q  178 tgtgaaaataattttattgaagatgatagtttttatta 215  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  27456858 tgtgaaaataattttcttgaagatggtagtttttatta 27456821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 134; Significance: 3e-69; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 819 - 968
Target Start/End: Complemental strand, 86922 - 86774
Alignment:
Q  819 gtataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataa 918  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  86922 gtataaggaataatgatatataaggaataatgattttt-gctatatcattcacaaggtattttggcacaatatatagaaacatatttgctgtcctaataa 86824  T
Q  919 ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgat 968  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86823 ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgat 86774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 820 - 968
Target Start/End: Original strand, 18556573 - 18556720
Alignment:
Q  820 tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat 919  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18556573 tataaggaataatgatatgtatggaataatgatttt-tgctatatcattcacaaggtatattggtacaatatatagaaacatatttgctgtcctaataat 18556671  T
Q  920 tgcttcctacagctatggtttgactttctctaatcaattacagtgtgat 968  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  18556672 tgcttcctccagctatggtttgactttctctagtcaattatagtgtgat 18556720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 31911860 - 31911762
Alignment:
Q  120 gaacctgcaatttgaaccctaactaataagtatataaaaaga---aattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    |||||| |||||||| |||||||||||||||||||||||  |   ||| || |||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  31911860 gaacctacaatttgagccctaactaataagtatataaaagtataaaatcgaattcctaaagtgtgaaaataattttcttgaagatgatggttttcatta 31911762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 7959679 - 7959558
Alignment:
Q  92 gtttctaagattttggtggcctgcgggtgaacctgcaatttgaaccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattt 191  Q
    |||||||||||||||||| |||  |||| || || ||||||||  | ||| ||||||| |||||||||  |||||| || ||||||||||||||||||||    
T  7959679 gtttctaagattttggtgtcctaagggtaaatctacaatttgagtcttaaataataagcatataaaaa--aattgaatttctaaagtgtgaaaataattt 7959582  T
Q  192 tattgaagatgatagtttttatta 215  Q
      ||||| ||||| ||||||||||    
T  7959581 acttgaaaatgatggtttttatta 7959558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 33093456 - 33093413
Alignment:
Q  172 ctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  33093456 ctaaagtgtgaaaataattttcttgaagatgatagtttttatta 33093413  T

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Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 51880454 - 51880571
Alignment:
Q  99 agattttggtggcctgcgggtgaacctgcaatttgaaccctaactaataagtatata-aaaagaaattgacttcctaaagtgtgaaaataattttattga 197  Q
    ||||| |||||||||  ||| ||||||  ||||||  |||||||||||||||| ||| |||| ||||||| ||||||||||||||||||| |||| ||||    
T  51880454 agattctggtggcctaagggcgaacctataatttgggccctaactaataagtacatataaaaaaaattgaattcctaaagtgtgaaaatatttttcttga 51880553  T
Q  198 agatgatagtttttatta 215  Q
    | ||||||||||||||||    
T  51880554 atatgatagtttttatta 51880571  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 54721904 - 54721844
Alignment:
Q  143 taataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgata 205  Q
    |||||||||||||| ||  |||| | ||| |||||||||||||||||||| ||||||||||||    
T  54721904 taataagtatataataa--aattaaattcttaaagtgtgaaaataattttcttgaagatgata 54721844  T

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Target: chr1 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 19020074 - 19020156
Alignment:
Q  136 ccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttattatgtt 219  Q
    ||||||||||||||||||| |||| || |||| ||| |||||| ||||||||||||  ||||||||||||||||||||||||||    
T  19020074 ccctaactaataagtatatcaaaa-aatttgaattcataaagtttgaaaataatttgtttgaagatgatagtttttattatgtt 19020156  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 42066888 - 42066953
Alignment:
Q  150 tatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    |||||| ||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  42066888 tatatataaaaaaattgaattgctaaagtgtgaaaataattttcttgaagatgatagtttttatta 42066953  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 58647 - 58709
Alignment:
Q  142 ctaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgata 205  Q
    ||||||||||||| |||| |||| || |||||||||||||||||||||||| ||||||||||||    
T  58647 ctaataagtatattaaaaaaaat-gaattcctaaagtgtgaaaataattttcttgaagatgata 58709  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 6132958 - 6132896
Alignment:
Q  151 atataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    |||||||||||  |||| |||||||||||||||||||||||| || ||||||||| |||||||||    
T  6132958 atataaaaaga--ttgaattcctaaagtgtgaaaataattttcttaaagatgataatttttatta 6132896  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 5912209 - 5912259
Alignment:
Q  169 ttcctaaagtgtgaaaataattttattgaagatgatagtttttattatgtt 219  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  5912209 ttcctaaagtgtgaaaataattttcttgaagattatagtttttattatgtt 5912259  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 33023944 - 33023984
Alignment:
Q  175 aagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  33023944 aagtgtgaaaataattttcttgaagatgatagtttttatta 33023984  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 35585094 - 35585051
Alignment:
Q  172 ctaaagtgtgaaaataattttattgaagatgatagtttttatta 215  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||    
T  35585094 ctaaagtgtgaaaataattttctttgagatgatagtttttatta 35585051  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 44942119 - 44942182
Alignment:
Q  142 ctaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgata 205  Q
    ||||| |||||||| ||| ||||||| |||||||||||  |||||| |||| ||||||||||||    
T  44942119 ctaattagtatatataaaaaaattgaattcctaaagtgataaaatagttttcttgaagatgata 44942182  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 42962696 - 42962767
Alignment:
Q  139 taactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagttttta 212  Q
    |||||||||| ||||||||||  |||| | ||| |||||||||||||||||||  |||||  ||||||||||||    
T  42962696 taactaataaatatataaaaa--aattaaattcttaaagtgtgaaaataatttctttgaatgtgatagttttta 42962767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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