View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8566_low_10 (Length: 405)

Name: NF8566_low_10
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8566_low_10
NF8566_low_10
[»] chr6 (17 HSPs)
chr6 (1-394)||(26890615-26891006)
chr6 (124-315)||(27713769-27713960)
chr6 (1-270)||(26853803-26854094)
chr6 (123-226)||(26631744-26631847)
chr6 (123-226)||(26737719-26737822)
chr6 (123-258)||(27422277-27422412)
chr6 (123-237)||(27651942-27652055)
chr6 (124-216)||(26966390-26966482)
chr6 (123-211)||(31289542-31289630)
chr6 (255-309)||(27651844-27651898)
chr6 (252-325)||(26641217-26641290)
chr6 (252-325)||(26747183-26747256)
chr6 (13-131)||(27652069-27652184)
chr6 (8-92)||(27713976-27714060)
chr6 (252-321)||(26828715-26828784)
chr6 (1-41)||(26631653-26631693)
chr6 (1-41)||(26737628-26737668)
[»] scaffold0349 (2 HSPs)
scaffold0349 (124-315)||(17984-18175)
scaffold0349 (8-92)||(17884-17968)
[»] chr8 (1 HSPs)
chr8 (123-315)||(29269635-29269827)
[»] scaffold0003 (1 HSPs)
scaffold0003 (123-258)||(64951-65086)
[»] chr4 (6 HSPs)
chr4 (244-326)||(18682705-18682787)
chr4 (244-294)||(18650319-18650369)
chr4 (244-293)||(18718539-18718588)
chr4 (1-131)||(18692271-18692402)
chr4 (278-322)||(18692037-18692081)
chr4 (1-41)||(18674282-18674322)
[»] chr2 (2 HSPs)
chr2 (11-83)||(17989856-17989928)
chr2 (244-300)||(946412-946469)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 26890615 - 26891006
Alignment:
Q  1 agagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaatgctcatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890615 agagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaatgctcatgt 26890714  T
Q  101 aaagagtaaaccagatgaaggtcagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgc 200  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890715 aaagag--aaccagatgaaggtcagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgc 26890812  T
Q  201 caaatcagttttctgagacagaacttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgata 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890813 caaatcagttttctgagacagaacttatgtagcagcagcaacacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgata 26890912  T
Q  301 ctgacagatggttcatcacaatctctttctggtatgatgatgtgaatgaatgccttttcaccctggacacacgaggctcgactgtttgatgtcc 394  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  26890913 ctgacagatggttcatcacaatctctttctggtatgataatgtgaatgaatgccttttcaccctggacacaagaggctcgactgtttggtgtcc 26891006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 124 - 315
Target Start/End: Complemental strand, 27713960 - 27713769
Alignment:
Q  124 agaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaa 223  Q
    |||||||||||  |||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  27713960 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaa 27713861  T
Q  224 cttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 315  Q
    ||| |||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  27713860 cttgtgtagcagcaacaacatatgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 27713769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 26853803 - 26854094
Alignment:
Q  1 agagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaatgctcatgt 100  Q
    |||||| |||||| ||||||  ||||||||||||||||| |||  |||||| |||  |||||||||||||||||||||||||| |||||||  || |||     
T  26853803 agagttttgagaaattcaattttagtacacaaattggaaccaacatgttcaagaatgaaggaagcacgaaggaggatgtgatattcaccaacccttatgg 26853902  T
Q  101 aaagagtaaaccagatgaaggtcagaact----------------------tgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattc 178  Q
    |||||||||| |||||||| |||||||||                      |||||  |||||||||||| | |||||||||||||||||||||||||||    
T  26853903 aaagagtaaatcagatgaaagtcagaacttggaagtgtccgagaccgaacttgtgtagcagcaacaacactgtatggctcttgtgattaataagttattc 26854002  T
Q  179 ttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagcaaaacatgtatgtatgattaatttgctttta 270  Q
    || |||||||||| ||||||||||| ||||||||||||||||||||||  |||| ||||| || |||| |||||||||||||||| ||||||    
T  26854003 ttgtgtaaaaacaattttctgccaagtcagttttctgagacagaacttgcgtaggagcagaaacacatatatgtatgattaatttcctttta 26854094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 26631744 - 26631847
Alignment:
Q  123 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 222  Q
    ||||||||||||  | |||||||||  | ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  26631744 cagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacaga 26631843  T
Q  223 actt 226  Q
    ||||    
T  26631844 actt 26631847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 26737719 - 26737822
Alignment:
Q  123 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 222  Q
    ||||||||||||  | |||||||||  | ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  26737719 cagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacaga 26737818  T
Q  223 actt 226  Q
    ||||    
T  26737819 actt 26737822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 258
Target Start/End: Complemental strand, 27422412 - 27422277
Alignment:
Q  123 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 222  Q
    ||||||||| ||  ||| |||||||| | ||||||||||| ||||||||| ||||||| ||||||| || ||||||||||||||| |||||||  |||||    
T  27422412 cagaacttgagtagcagaaacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacaga 27422313  T
Q  223 acttatgtagcagcagcaaaacatgtatgtatgatt 258  Q
    |||| ||| |||||| ||| | ||||||||||||||    
T  27422312 acttgtgtcgcagcaacaacaaatgtatgtatgatt 27422277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 27652055 - 27651942
Alignment:
Q  123 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 222  Q
    ||||||||| ||  |||||||||||| | ||  || |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  27652055 cagaacttgcgtagcagcaacaacactgtataacttttgtgattaataagttattcatgtgtaaaaacacttttctgccaaatcagtttt-tgagacaga 27651957  T
Q  223 acttatgtagcagca 237  Q
    |||| | ||||||||    
T  27651956 acttgtttagcagca 27651942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 26966390 - 26966482
Alignment:
Q  124 agaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctga 216  Q
    |||||||||||  ||||||||| || | |||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  26966390 agaacttgtgtagcagcaacaaaactgtatggctcttgagattaataaggtattcttgtgtaaaaacactttgctgccaaatcagttttctga 26966482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 31289542 - 31289630
Alignment:
Q  123 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttt 211  Q
    |||||| |||||  ||| |||||||| | ||||||||||||||||||||| ||||||| ||||||||||||| |||||||  |||||||    
T  31289542 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 31289630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 27651898 - 27651844
Alignment:
Q  255 gattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagat 309  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  27651898 gattaatttgcttttacgaatacaagagtttgtacatattgcgatactgacagat 27651844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 26641217 - 26641290
Alignment:
Q  252 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 325  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26641217 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26641290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 26747183 - 26747256
Alignment:
Q  252 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 325  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26747183 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26747256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 27652184 - 27652069
Alignment:
Q  13 atttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaacc 112  Q
    ||||||||| ||||||||||||||||||| |  |||||| |||||   |||||||  | |||||||||||| ||||| || || ||  |||||| |||      
T  27652184 atttcaatcttagtacacaaattggaatccacatgttcaagaaaa---gaagcacagaagaggatgtgatattcacctatccttatagaaagagaaaaga 27652088  T
Q  113 agatgaaggtcagaacttg 131  Q
    |||||||| ||||||||||    
T  27652087 agatgaagatcagaacttg 27652069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 27714060 - 27713976
Alignment:
Q  8 tgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaat 92  Q
    |||||||||||||| |||||||||| |||||||| | |||||||  || |||||||||| ||  ||||||| | || ||||||||    
T  27714060 tgagaatttcaatcttagtacacaatttggaatctacgtgttcaacaagaaaggaagcatgagagaggatgcggtattcaccaat 27713976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 26828715 - 26828784
Alignment:
Q  252 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaa 321  Q
    ||||||||| |||| |||| || |||||| ||||||||||| ||||||| ||| |||| |||| ||||||    
T  26828715 tatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaa 26828784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26631653 - 26631693
Alignment:
Q  1 agagttatgagaatttcaatcgtagtacacaaattggaatc 41  Q
    |||||| |||||||||||||  |||||||||||||||||||    
T  26631653 agagttttgagaatttcaatattagtacacaaattggaatc 26631693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26737628 - 26737668
Alignment:
Q  1 agagttatgagaatttcaatcgtagtacacaaattggaatc 41  Q
    |||||| |||||||||||||  |||||||||||||||||||    
T  26737628 agagttttgagaatttcaatattagtacacaaattggaatc 26737668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 124 - 315
Target Start/End: Original strand, 17984 - 18175
Alignment:
Q  124 agaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaa 223  Q
    |||||||||||  |||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  17984 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaa 18083  T
Q  224 cttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 315  Q
    ||| |||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  18084 cttgtgtagcagcaacaacatatgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 18175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 17884 - 17968
Alignment:
Q  8 tgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaat 92  Q
    |||||||||||||| |||||||||| |||||||| | |||||||  || |||||||||| ||  ||||||| | || ||||||||    
T  17884 tgagaatttcaatcttagtacacaatttggaatctacgtgttcaacaagaaaggaagcatgagagaggatgcggtattcaccaat 17968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 123 - 315
Target Start/End: Complemental strand, 29269827 - 29269635
Alignment:
Q  123 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 222  Q
    ||||||||||||  |||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||    
T  29269827 cagaacttgtgtagcagcaacaacactgtatggctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcacttttcagagacaga 29269728  T
Q  223 acttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 315  Q
    |||| |||||||||| ||| | ||||||| ||||||||||||||||||| | ||||||||| |||| |||||||||||| ||| |||| ||||    
T  29269727 acttgtgtagcagcaacaacatatgtatgcatgattaatttgcttttaataatacaagagtatgtagatattgtgataccgactgatgtttca 29269635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 258
Target Start/End: Original strand, 64951 - 65086
Alignment:
Q  123 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 222  Q
    ||||||||| ||  ||| |||||||| | ||||||||||| ||||||||| ||||||| ||||||| || ||||||||||||||| |||||||  |||||    
T  64951 cagaacttgagtagcagaaacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacaga 65050  T
Q  223 acttatgtagcagcagcaaaacatgtatgtatgatt 258  Q
    |||| ||| |||||| ||| | ||||||||||||||    
T  65051 acttgtgtcgcagcaacaacaaatgtatgtatgatt 65086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 18682787 - 18682705
Alignment:
Q  244 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctct 326  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||| | |||| || ||||||||| |||||||||||    
T  18682787 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaatctct 18682705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 18650369 - 18650319
Alignment:
Q  244 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatatt 294  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  18650369 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatatt 18650319  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 18718588 - 18718539
Alignment:
Q  244 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatat 293  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  18718588 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatat 18718539  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 18692402 - 18692271
Alignment:
Q  1 agagttatgagaatttcaatcgtagtacacaaattggaat-caatgtgttcaggaaaaaaggaagcacgaaggaggatgtgataatcaccaatgctcatg 99  Q
    |||||| |||||||||||||| ||||| ||||||| |||| || |||||||| ||| |||  ||||| | || ||||||||||| ||| |||| || ||     
T  18692402 agagttttgagaatttcaatcttagtagacaaattagaatccactgtgttcaagaagaaaaaaagcatggagcaggatgtgatattcatcaatccttata 18692303  T
Q  100 taaagagtaaaccagatgaaggtcagaacttg 131  Q
     |||||| ||| |||||||||  |||||||||    
T  18692302 gaaagagaaaatcagatgaagaacagaacttg 18692271  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 18692081 - 18692037
Alignment:
Q  278 aagagtttgtacatattgtgatactgacagatggttcatcacaat 322  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  18692081 aagagtttgtacatattttcataccgacagatggttcatcacaat 18692037  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18674322 - 18674282
Alignment:
Q  1 agagttatgagaatttcaatcgtagtacacaaattggaatc 41  Q
    |||||| |||||||||||||| ||||| |||||||||||||    
T  18674322 agagttttgagaatttcaatcttagtagacaaattggaatc 18674282  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 17989928 - 17989856
Alignment:
Q  11 gaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgata 83  Q
    ||||| ||||| |||||||||||| |||||| |||||||||  || |||  ||||||||||||||||||||||    
T  17989928 gaattccaatcttagtacacaaatgggaatccatgtgttcaataagaaaacaagcacgaaggaggatgtgata 17989856  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 946469 - 946412
Alignment:
Q  244 catgtatgtatgattaatttgcttttaagag-tacaagagtttgtacatattgtgata 300  Q
    ||||||||| ||||||  ||||||||||||| | |||||||||||||||||| |||||    
T  946469 catgtatgtgtgattagattgcttttaagagatgcaagagtttgtacatattttgata 946412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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