View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_low_13 (Length: 383)
Name: NF8566_low_13
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 23945608 - 23945261
Alignment:
| Q |
19 |
attacaagctttgacatctagacctttatcttcaacaccaatagacttagtagtcctccatattaaagatgtcatgtccccacttttattcacattgctc |
118 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23945608 |
attacaagctttgacatctggccctttatcttcaacaccaatagacttagtagtcctccatattaaagatgtcatgtccccacttttattcacaccgctc |
23945509 |
T |
|
| Q |
119 |
aagcttttannnnnnnnccgaattatcaccgctagaactagcaacatgagttggtttcccattatttatgcctattttgcttgtaccaatatcacttcta |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23945508 |
aagcttttattttttg-ccgaattatcaccgctagaactagcaacatgagttggtttcccattatttatgcctatttttcttgtaccaatatcacttcta |
23945410 |
T |
|
| Q |
219 |
gttcnnnnnnnnnnnnnnnnncctactttaatgctagcattagaagagttaatttgggagggtttgtacccgctcctattttcatgcatatgatcgtatt |
318 |
Q |
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|||| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
23945409 |
gttcttttttgtttattttttcgtactttaatgcttgcattagaagagttaatttgggagggtttgtaaccgctccttatttcatgcatatgatcgtatt |
23945310 |
T |
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| Q |
319 |
tttcagcattcaattcattaattcttttcttaagattttgaaatgatgt |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23945309 |
tttcagcattcaattcattaattcttttcttaagattttgaaatgatgt |
23945261 |
T |
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