View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_low_15 (Length: 366)
Name: NF8566_low_15
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 38796060 - 38796411
Alignment:
| Q |
1 |
tattgtatatattgattttgttgctttcccaacaactagtatcaaagttgaggtttcaagcttcttnnnnnnnnn--gttgaggtttcgatcaatggaga |
98 |
Q |
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| T |
38796060 |
tattgtatatattgattttgttgctttcccaacaactagtatcaaagttgaggtttcaagcttcttcaaaaaaaaaagtttaggtttcgatcaatggaga |
38796159 |
T |
|
| Q |
99 |
aagagaagaagtttactgtgttgtgttattcatttgaagagaggttatagttctaatattaatatttttaaatatacttgttattatggctacacattga |
198 |
Q |
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| T |
38796160 |
aagagaagaagtttactgtgttgtgttattcatttgaagagaggttatagttctaatattaatatttttaaatatacttgttattatggctacacattga |
38796259 |
T |
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| Q |
199 |
agttggatattcctttgtttgatggaagaatgaatttctccttatgacaatacacaaatataaaattcatgaaggatttgcgaaacctaaaagagaagac |
298 |
Q |
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| T |
38796260 |
agttggatattcctttgtttgatggaagaatgaatttctccttatgacaatacacaaatataaaattcatgaaggatttgcgaaacttaaaagagaagac |
38796359 |
T |
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| Q |
299 |
aaaaagttgaacaatactcattcttcaaacgtgaagaagataaagtgaagaa |
350 |
Q |
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| T |
38796360 |
aaaaagttgaacaatactcattcttcaaacgtgaagaagataaagtgaagaa |
38796411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 36751740 - 36751841
Alignment:
| Q |
195 |
ttgaagttggatattcctttgtttgatggaagaatgaatttctccttatgacaatacacaaatataaaattcatgaaggatttgcgaaacctaaaagaga |
294 |
Q |
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| T |
36751740 |
ttgaagttgaatcttcctttgtttgatggaaggatgaacttctcgttatgacaatacataagttcaaaaatcgtgaaagatttgcgaagcctaaaagaga |
36751839 |
T |
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| Q |
295 |
ag |
296 |
Q |
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|| |
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| T |
36751840 |
ag |
36751841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 36097934 - 36097994
Alignment:
| Q |
195 |
ttgaagttggatattcctttgtttgatggaagaatgaatttctccttatgacaatacacaa |
255 |
Q |
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| T |
36097934 |
ttgaagttggatggtcctttgtttgatggaaggatgaacttctctttatggcaacacacaa |
36097994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 37642633 - 37642682
Alignment:
| Q |
195 |
ttgaagttggatattcctttgtttgatggaagaatgaatttctccttatg |
244 |
Q |
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| T |
37642633 |
ttgaagttgaatgttcctttgtttgaagggaggatgaatttctccttatg |
37642682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 10438472 - 10438357
Alignment:
| Q |
195 |
ttgaagttggatattcctttgtttgatggaagaatgaatttctccttatgacaatacacaaatataaaattcatgaaggatttgcgaaacctaaaagaga |
294 |
Q |
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||||||||||||||||||||||||||| | || |||| ||||||||| |||| ||||| | ||||||| ||| |||||||| ||| ||||||||| | |
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| T |
10438472 |
ttgaagttggatattcctttgtttgataggaggatgatcctctccttataccaatgcacaattctaaaatttatggaggatttgtgaagcctaaaagata |
10438373 |
T |
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| Q |
295 |
agacaa-aaagttgaa |
309 |
Q |
| |
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| T |
10438372 |
agccaagaaagttgaa |
10438357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 10098218 - 10098323
Alignment:
| Q |
198 |
aagttggatattcctttgtttgatggaagaatgaatttctccttatgacaatacacaaatataaaattcatgaaggatttgcgaaacctaaaagagaaga |
297 |
Q |
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||||||||| || |||||||||||| | ||||| |||| |||||| ||| ||||||| |||||||||| || ||||| ||||||||||||||||| |
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| T |
10098218 |
aagttggatgtttctttgtttgatgagatgatgaacttctacttatggtaatgcacaaatctaaaattcattcagaatttgaaaaacctaaaagagaaga |
10098317 |
T |
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| Q |
298 |
caaaaa |
303 |
Q |
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|||||| |
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| T |
10098318 |
caaaaa |
10098323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 27049430 - 27049333
Alignment:
| Q |
195 |
ttgaagttggatattcctttgtttgatggaagaatgaatttctccttatgacaatacacaaatataaaattcatgaaggatttgcgaaacctaaaaga |
292 |
Q |
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|||||||||||| |||||| ||||| ||||| ||||| |||||||||||||||| || || | |||||| ||| ||||||||| || ||||||||| |
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| T |
27049430 |
ttgaagttggatgctcctttatttgacggaaggatgaacttctccttatgacaatgcataagttcaaaatttatggaggatttgcaaatcctaaaaga |
27049333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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