View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_low_17 (Length: 352)
Name: NF8566_low_17
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 4370985 - 4370653
Alignment:
| Q |
4 |
gctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactg |
103 |
Q |
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| T |
4370985 |
gctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactg |
4370886 |
T |
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| Q |
104 |
caggttactataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
4370885 |
caggttactataacacaaggtttcatgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaa |
4370786 |
T |
|
| Q |
204 |
ggataatgaacaacctggccatgctaattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattgcaggtggtgaacttgctggtgag |
303 |
Q |
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| T |
4370785 |
ggataatgaacaacctggccatgctaattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattgcaggtggtgaacttgctggtgag |
4370686 |
T |
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| Q |
304 |
aatgctttggagagatatgattcaagtgcttat |
336 |
Q |
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| T |
4370685 |
aatgcattggagagatatgattcaagtgcttat |
4370653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 4363182 - 4362850
Alignment:
| Q |
4 |
gctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactg |
103 |
Q |
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| T |
4363182 |
gctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactg |
4363083 |
T |
|
| Q |
104 |
caggttactataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaa |
203 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
4363082 |
caggttactataacacaaagtttcatgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaa |
4362983 |
T |
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| Q |
204 |
ggataatgaacaacctggccatgctaattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattgcaggtggtgaacttgctggtgag |
303 |
Q |
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|||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4362982 |
ggataatgaacaaccttgtgatgcaaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagattgcaggtggtgaacttgctggtgag |
4362883 |
T |
|
| Q |
304 |
aatgctttggagagatatgattcaagtgcttat |
336 |
Q |
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| T |
4362882 |
aatgctttggagagatatgattcaagtgcttat |
4362850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 41043880 - 41044194
Alignment:
| Q |
13 |
atattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttact |
112 |
Q |
| |
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|||||||| ||| ||| ||||||||||||| ||| | || ||||| ||||||||||||| |||| || || ||| ||||| ||||||| ||||||| |
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| T |
41043880 |
atattccagacatctggtgtgaaactatctggtaaagttgcgggaatccattggcattacagatcaaggtcgcacgcagctgaactaactgctggttact |
41043979 |
T |
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| Q |
113 |
ataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaaggataatga |
212 |
Q |
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||||||| || | ||||||| ||| | ||||| || ||||| ||||||| |||| ||| | | |||||||| |||||||||||||| || | || |
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| T |
41043980 |
ataacactagacataatgatgggtatcttccaattgccaaaatgtttgcaaaccatgacgttgtcttcaatttcacctgcatggaaatgaaagacagaga |
41044079 |
T |
|
| Q |
213 |
acaacctggccatgctaattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattgcaggtggtgaacttgctggtgagaatgctttg |
312 |
Q |
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||||||||| |||||||| ||||| |||||||| || || | ||||| |||| ||||||||| || || | ||||||||||| || ||||| || |
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| T |
41044080 |
acaacctggacatgctaactgttcgccagaagggttagttcaccaagtcaagaaggcaacaaaaatggctaatatagaacttgctggggaaaatgcactg |
41044179 |
T |
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| Q |
313 |
gagagatatgattca |
327 |
Q |
| |
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||||||||||||||| |
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| T |
41044180 |
gagagatatgattca |
41044194 |
T |
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