View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_low_19 (Length: 326)
Name: NF8566_low_19
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 25 - 273
Target Start/End: Complemental strand, 3313160 - 3312903
Alignment:
| Q |
25 |
ggtcaagggaggccatagtttcctgacgtttttcaannnnnnnnnccaattagtaatataccataattttatatgttgtttcaataaggtcagcaatgtg |
124 |
Q |
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| T |
3313160 |
ggtcaagggaggccatagttcccccacgtttttcaattttttttttcaactagtaatataccataattttatatgttgtttcaataaggtcagcaatgtg |
3313061 |
T |
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| Q |
125 |
gtcatccatcactacgagtctataagtgttatgttatattatatgtttagtgggtctctgtcttttatggaga-aaaaaaaagcattttaacttct---- |
219 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3313060 |
gtcctccatcactacgagtctataagtgttacgttatattatatgtttagtgggtctctgtcttttatggagagaaaaaaaagcattttaacttctaaaa |
3312961 |
T |
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| Q |
220 |
----nnnnnnnnnngtcctttaattatgtaacttgtaagccctttaactatggatgta |
273 |
Q |
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| T |
3312960 |
aaaaaaaaaaaaaagtcctttaattatgtaacttgtaagccctttaactatggatgta |
3312903 |
T |
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Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 24537500 - 24537643
Alignment:
| Q |
75 |
tagtaatataccataattttatatgttgtttcaataaggtcagcaatgtggtcatccatcactacgagtctataagtgttatgttatattatatgtttag |
174 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||| |||||||||||| ||| |
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| T |
24537500 |
tagtaatataccatgattttatatgatgtttcaataaggtcagcaatgtggccccccatcactatgagtctatgagtgttatggtatattatatgtctag |
24537599 |
T |
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| Q |
175 |
tgggtctctgtcttttatgg-agaaaaaaaaagcattttaactt |
217 |
Q |
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| T |
24537600 |
tggatctttgtcttttatggaagaaaaaaaatgctttttaactt |
24537643 |
T |
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