View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8566_low_20 (Length: 322)

Name: NF8566_low_20
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8566_low_20
NF8566_low_20
[»] chr1 (5 HSPs)
chr1 (1-185)||(48593753-48593937)
chr1 (1-185)||(48598364-48598548)
chr1 (202-242)||(48593931-48593971)
chr1 (202-242)||(48598542-48598582)
chr1 (285-313)||(49946712-49946740)
[»] chr7 (1 HSPs)
chr7 (278-313)||(30891119-30891154)
[»] chr4 (1 HSPs)
chr4 (285-313)||(45741982-45742010)
[»] chr3 (1 HSPs)
chr3 (285-313)||(24560309-24560337)
[»] chr2 (2 HSPs)
chr2 (285-313)||(20545801-20545829)
chr2 (285-313)||(29525857-29525885)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 48593753 - 48593937
Alignment:
Q  1 acacacctaaatctccttttatctatcttttctggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaatt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48593753 acacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaatt 48593852  T
Q  101 cctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  48593853 cctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt 48593937  T

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Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 48598364 - 48598548
Alignment:
Q  1 acacacctaaatctccttttatctatcttttctggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaatt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48598364 acacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaatt 48598463  T
Q  101 cctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  48598464 cctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt 48598548  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 48593931 - 48593971
Alignment:
Q  202 aagagtttatttggatagagagtttaagaaggtagagttca 242  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  48593931 aagagtttgtttggatagagagtttaagaaggtagagttca 48593971  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 48598542 - 48598582
Alignment:
Q  202 aagagtttatttggatagagagtttaagaaggtagagttca 242  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  48598542 aagagtttgtttggatagagagtttaagaaggtagagttca 48598582  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 49946740 - 49946712
Alignment:
Q  285 aaataaattaaatgtgattgaagtattat 313  Q
    |||||||||||||||||||||||||||||    
T  49946740 aaataaattaaatgtgattgaagtattat 49946712  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 30891154 - 30891119
Alignment:
Q  278 tttttataaataaattaaatgtgattgaagtattat 313  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30891154 tttttttaaataaattaaatgtgattgaagtattat 30891119  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 45741982 - 45742010
Alignment:
Q  285 aaataaattaaatgtgattgaagtattat 313  Q
    |||||||||||||||||||||||||||||    
T  45741982 aaataaattaaatgtgattgaagtattat 45742010  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 24560309 - 24560337
Alignment:
Q  285 aaataaattaaatgtgattgaagtattat 313  Q
    |||||||||||||||||||||||||||||    
T  24560309 aaataaattaaatgtgattgaagtattat 24560337  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 20545801 - 20545829
Alignment:
Q  285 aaataaattaaatgtgattgaagtattat 313  Q
    |||||||||||||||||||||||||||||    
T  20545801 aaataaattaaatgtgattgaagtattat 20545829  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 29525885 - 29525857
Alignment:
Q  285 aaataaattaaatgtgattgaagtattat 313  Q
    |||||||||||||||||||||||||||||    
T  29525885 aaataaattaaatgtgattgaagtattat 29525857  T

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