View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8566_low_21 (Length: 319)

Name: NF8566_low_21
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8566_low_21
NF8566_low_21
[»] chr7 (3 HSPs)
chr7 (6-75)||(14570503-14570572)
chr7 (245-305)||(14570743-14570803)
chr7 (139-172)||(14570637-14570670)
[»] chr6 (3 HSPs)
chr6 (245-305)||(19782730-19782790)
chr6 (6-75)||(19782490-19782559)
chr6 (139-172)||(19782624-19782657)


Alignment Details
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 14570503 - 14570572
Alignment:
Q  6 atcaattcctttacctatgaaaatcaatacttatatctgtaaacattaatataatgttattttgcgtacc 75  Q
    |||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  14570503 atcaattcttttacctatcaaaatcactacttatatctgcaaacattaatataatgttattttacgtacc 14570572  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 14570743 - 14570803
Alignment:
Q  245 ttttcgtacatctgtcttttactgtttcacatgtaagtattcgtaaatagctcataacctg 305  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||    
T  14570743 ttttcgtacatctgtgttttactgtttcacatgtaagtattcataaataactcataacctg 14570803  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 14570637 - 14570670
Alignment:
Q  139 ctcaatcaattcttacgaactatgtacaaacaaa 172  Q
    ||||||||| ||||||||||||||||||||||||    
T  14570637 ctcaatcaaatcttacgaactatgtacaaacaaa 14570670  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 19782730 - 19782790
Alignment:
Q  245 ttttcgtacatctgtcttttactgtttcacatgtaagtattcgtaaatagctcataacctg 305  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  19782730 ttttcgtacatctgtgttttactgtttcgcatgtaagtattcataaatagctcataacctg 19782790  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 19782490 - 19782559
Alignment:
Q  6 atcaattcctttacctatgaaaatcaatacttatatctgtaaacattaatataatgttattttgcgtacc 75  Q
    ||||| ||||||| |||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  19782490 atcaactcctttatctatcaaaatcactacttatatctgcaaacattaatataatgttattttacgtacc 19782559  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 19782624 - 19782657
Alignment:
Q  139 ctcaatcaattcttacgaactatgtacaaacaaa 172  Q
    ||||||||||||||||||||||||||||||||||    
T  19782624 ctcaatcaattcttacgaactatgtacaaacaaa 19782657  T

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