View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_low_24 (Length: 297)
Name: NF8566_low_24
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_24 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 43 - 297
Target Start/End: Complemental strand, 48175870 - 48175616
Alignment:
| Q |
43 |
aattcttttgatctcttcgattgaaaaggtatttccagggtctagtaaaatttgatcaaatatcattttggtaggtatttgaatctaatacaatgatttg |
142 |
Q |
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| T |
48175870 |
aattcttttgatctcttcgattgaaaaggtatttccagggtctagtaaaatttgatcaaatatcattttggtaggtatttgaatctaatacaatgatttg |
48175771 |
T |
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| Q |
143 |
tcttaattgaagttgattgatcacttgaatctaataaatttgtgggattacaagcaagcatacactaattgaacccaaaaaagaagcaacaagaaagaag |
242 |
Q |
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| T |
48175770 |
tcttaattgaagttgattgatcacttgaatctaataaatttgtgggattacaagcaagcatacactaatttaacccaaaaaagaagcaacaagaaagaag |
48175671 |
T |
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| Q |
243 |
tcatgtaaacaaacctgtaaattggaccatattgcttggcaaggactgagaaaac |
297 |
Q |
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| T |
48175670 |
tcatgtaaacaaacctgtaaattggaccatattgcttggcaaggactgagaaaac |
48175616 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 4092176 - 4092220
Alignment:
| Q |
253 |
aaacctgtaaattggaccatattgcttggcaaggactgagaaaac |
297 |
Q |
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| T |
4092176 |
aaacctgtagatagggccatattgcttagcaaggactgagaaaac |
4092220 |
T |
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