View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_low_27 (Length: 273)
Name: NF8566_low_27
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 51700710 - 51700963
Alignment:
| Q |
1 |
cagctcatcttaagtttgcaggtgaaattagttcttatcagctcaattttctagtaatgtatagatatatgttcttataaaattcctacaactacaaata |
100 |
Q |
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| T |
51700710 |
cagctcatcttaagtttgcaggtgaaattagttcttatcagctcaattttctagtaatgtatagatatatgttcttataaaattcctacaactacaaata |
51700809 |
T |
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| Q |
101 |
atccaaaattctacaaaa-taatctcaagaaataatagacaaacatgcttgnnnnnnnnctctaaaagaaaacatgcatttatattttatattataagtg |
199 |
Q |
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| T |
51700810 |
atccaaaattc-acaaaacaaatctcaagaaataatagacaaacatgcttgaaaaaaaactct-aaagaaaacatgcatttatattttatattataagtg |
51700907 |
T |
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| Q |
200 |
acccacactcacataatcgaaatcagataagatgaatgtttttgatgcgttaaaac |
255 |
Q |
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| T |
51700908 |
actcacactcacataatcaaaatcagataagatgaatgtttttgatacgttgaaac |
51700963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 1447537 - 1447290
Alignment:
| Q |
8 |
tcttaagtttgcaggtgaaattagttcttatcagctcaattttctagtaatgtatagatatatgttcttataaaattcctacaactacaaataatccaaa |
107 |
Q |
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| T |
1447537 |
tcttaagtttgcaggtgaaattagttcttattagatcaattttcaagtagtgtatagatatatgttcttatgaaattcctgcaactacaaataatccaaa |
1447438 |
T |
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| Q |
108 |
attctacaaaataatctcaagaaataatagacaaacatgcttg-nnnnnnnnctctaaaagaaaacatgcatttatattttatattataagtgacccaca |
206 |
Q |
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| T |
1447437 |
attctacaa---aatctcaagaaataatagacaaacatgcttgaaaaagaaacttcaagagaaaacatgcatttatattttatattacaagtgactcacc |
1447341 |
T |
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| Q |
207 |
ctc--acataatcgaaatcagataagatgaatgtttttgatgcgttaaaac |
255 |
Q |
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| T |
1447340 |
cgccaacataatcgaaatcagaaaagatgaatgtctttgatacgtcaaaac |
1447290 |
T |
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