View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_low_31 (Length: 246)
Name: NF8566_low_31
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 107122 - 107348
Alignment:
| Q |
1 |
ccctatgtttgatttgattattatggctgcctgtaggtgatctgaagaagatcaaccacttggttaagcttgaaggtgctaaggagagattacaactgtt |
100 |
Q |
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| T |
107122 |
ccctatgtttgatttgattattatggctgcctgtaggtgatccgaagaagatcaaccacttggttaagcttgaaggtgctaaggagagattacaactgtt |
107221 |
T |
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| Q |
101 |
taaggcaaatctacttgaacagggagcttttgattctgttgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatgatgtcaaagac |
200 |
Q |
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| T |
107222 |
taaggcaaatctacttgaacagggagcttttgattctgctgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatcatgtcaaagac |
107321 |
T |
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| Q |
201 |
cctcaggctgagttgattgatcctgca |
227 |
Q |
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| T |
107322 |
cctcaggctgagttgattgatcctgca |
107348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 87787 - 87983
Alignment:
| Q |
30 |
cctgtaggtgatctgaagaagatcaaccacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagctt |
129 |
Q |
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| T |
87787 |
cctgtagatgatcccaagaaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcct |
87886 |
T |
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| Q |
130 |
ttgattctgttgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatgatgtcaaagaccctcaggctgagttgattgatcctgc |
226 |
Q |
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| T |
87887 |
ttgattctgttgttcaaggctgtcatggtgtctttcacactgcatctcccttttatcatgatgtcaaggatcctcaggctgaattgattgatcctgc |
87983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 29548967 - 29549082
Alignment:
| Q |
57 |
cacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagcttttgattctgttgttcaaggctgtcatg |
156 |
Q |
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|||||| |||| ||||| ||||| ||||| || || ||||| ||||||||| || |||||||| | || | |||||||||||| ||||||| || |||| |
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| T |
29548967 |
cacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattctgttattcaaggatgccatg |
29549066 |
T |
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| Q |
157 |
gtgtgtttcacactgc |
172 |
Q |
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| T |
29549067 |
gtgtctttcatactgc |
29549082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 25933440 - 25933555
Alignment:
| Q |
57 |
cacttggttaagcttgaaggtgctaaggagagattacaactgtttaaggcaaatctacttgaacagggagcttttgattctgttgttcaaggctgtcatg |
156 |
Q |
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||||||||||| ||||| ||||| |||||||| || ||||| ||||||||| |||| | ||| | || ||||||| ||||||||| | || ||| ||| |
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| T |
25933440 |
cacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgttgagggttgtgatg |
25933539 |
T |
|
| Q |
157 |
gtgtgtttcacactgc |
172 |
Q |
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|||| ||||| ||||| |
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| T |
25933540 |
gtgtctttcatactgc |
25933555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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