View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_low_35 (Length: 235)
Name: NF8566_low_35
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 48175538 - 48175416
Alignment:
| Q |
1 |
tccaatacgtctcatacagataaatcaaccatcctcctgctaaagccaatattgttgaagcaaaagagacactaattggaattggaaacaaccattccaa |
100 |
Q |
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| T |
48175538 |
tccaatacggctcatacagataaatcaaccatcctcctgctaaagccaatattgttgaagcaaaagagacactaattggaattggaaacaaccattccaa |
48175439 |
T |
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| Q |
101 |
atccatcaacaccattgcaaatt |
123 |
Q |
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|||||| |||||||||||||||| |
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| T |
48175438 |
atccatgaacaccattgcaaatt |
48175416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 48175351 - 48175304
Alignment:
| Q |
135 |
agtgcttcaagattttggcttatatagagaaattggaggtaaatggac |
182 |
Q |
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| T |
48175351 |
agtgcttcaagattttggcttatatagagaaattggaggtaaatggac |
48175304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 48175289 - 48175258
Alignment:
| Q |
196 |
gtccgtatatgaatgatgacatatgagaatta |
227 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48175289 |
gtccgtatatgaatgatgacatatgagaatta |
48175258 |
T |
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