View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8566_low_36 (Length: 227)

Name: NF8566_low_36
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8566_low_36
NF8566_low_36
[»] chr6 (4 HSPs)
chr6 (12-222)||(27876401-27876611)
chr6 (12-178)||(8481391-8481557)
chr6 (26-77)||(18148910-18148961)
chr6 (16-44)||(26978574-26978602)
[»] chr4 (4 HSPs)
chr4 (12-222)||(48699513-48699723)
chr4 (12-222)||(30947875-30948085)
chr4 (16-222)||(42268318-42268524)
chr4 (12-219)||(2001295-2001504)
[»] chr5 (2 HSPs)
chr5 (12-222)||(41720825-41721035)
chr5 (12-222)||(34354425-34354635)
[»] chr3 (3 HSPs)
chr3 (16-222)||(5820971-5821177)
chr3 (12-222)||(2814955-2815165)
chr3 (12-219)||(42587369-42587576)
[»] chr2 (1 HSPs)
chr2 (16-222)||(827894-828100)
[»] chr8 (2 HSPs)
chr8 (16-222)||(9441787-9441994)
chr8 (12-219)||(24596180-24596387)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 27876401 - 27876611
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27876401 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc 27876500  T
Q  112 ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa 211  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27876501 ataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgcagagaa 27876600  T
Q  212 gaataatctac 222  Q
    |||||||||||    
T  27876601 gaataatctac 27876611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 8481391 - 8481557
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc 111  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||   |||||||||||||  |||||||||||| |  |||||||     
T  8481391 gctcactttgcagttcattttctgcaaagactacatctctgccaacaacaagcttgcgaatagtgggatcccacaagcgataccccttcatcttgtcagt 8481490  T
Q  112 ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatc 178  Q
    |||||||||||| ||||||||  | |||||| | ||   ||||||||| ||||||||| ||||||||    
T  8481491 ataacccaagaatatacattttttagactttggatctgtctttgttctgtcttgggagatgtacatc 8481557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 18148910 - 18148961
Alignment:
Q  26 tcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgg 77  Q
    ||||||||| |||||||||||||| || |||||||||||||||||| |||||    
T  18148910 tcattttctacaaagactacatccatgataacaacaaccttgcgggtagtgg 18148961  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 26978574 - 26978602
Alignment:
Q  16 actttgcagttcattttctgcaaagacta 44  Q
    |||||||||||||||||||||||||||||    
T  26978574 actttgcagttcattttctgcaaagacta 26978602  T

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Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 48699513 - 48699723
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48699513 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc 48699612  T
Q  112 ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa 211  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48699613 ataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgcagagaa 48699712  T
Q  212 gaataatctac 222  Q
    |||||||||||    
T  48699713 gaataatctac 48699723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 30947875 - 30948085
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30947875 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc 30947974  T
Q  112 ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa 211  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  30947975 ataacccaagaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaa 30948074  T
Q  212 gaataatctac 222  Q
    |||||||||||    
T  30948075 gaataatctac 30948085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 42268524 - 42268318
Alignment:
Q  16 actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagcataa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42268524 actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataa 42268425  T
Q  116 cccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaagaat 215  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  42268424 cccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggacaaccaaacacatgcagagaagaat 42268325  T
Q  216 aatctac 222  Q
    |||||||    
T  42268324 aatctac 42268318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 2001504 - 2001295
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacat--ccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtca 109  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||||||||| |||| | |||||||||||||||  |||||||||||| || ||||||    
T  2001504 gctcactttgcagttcattttctgcaaagactacatatctctgctaacaacaagcttgtgagcagtgggatcccacaagcgataccccttcacgttgtca 2001405  T
Q  110 gcataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagag 209  Q
    |||||||||||||| ||||| || || |||||| | || |  |||||||||||||||||||||| |||  ||||||||  ||| || ||||||| ||  |    
T  2001404 gcataacccaagaatatacaatttctagactttggatctagttttgttctttcttgggagttgttcattgcgtacacaatacatccgaacacatataagg 2001305  T
Q  210 aagaataatc 219  Q
    ||||||||||    
T  2001304 aagaataatc 2001295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 41721035 - 41720825
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41721035 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc 41720936  T
Q  112 ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa 211  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  41720935 ataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaa 41720836  T
Q  212 gaataatctac 222  Q
    |||||||||||    
T  41720835 gaataatctac 41720825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 34354635 - 34354425
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34354635 gctcactttgcagttcattttctgcaaagactacatccctgctaacaataaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagc 34354536  T
Q  112 ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa 211  Q
    ||||||||||||||||||||| ||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34354535 ataacccaagaagatacattttctgaactttgggtccaacttcgttctgtcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa 34354436  T
Q  212 gaataatctac 222  Q
    |||||||||||    
T  34354435 gaataatctac 34354425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 5820971 - 5821177
Alignment:
Q  16 actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagcataa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5820971 actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataa 5821070  T
Q  116 cccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaagaat 215  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  5821071 cccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggacaaccaaacacatgcagagaagaat 5821170  T
Q  216 aatctac 222  Q
    |||||||    
T  5821171 aatctac 5821177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 2814955 - 2815165
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  2814955 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggaccccacaggcgataccccttaacattgtcagc 2815054  T
Q  112 ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa 211  Q
    |||||||||||||||||||||| | |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  2815055 ataacccaagaagatacatttcttagactttgggtccaactttgttctttcttgagagttgtacatcacatacacaggacaaccaaacacatgtagagaa 2815154  T
Q  212 gaataatctac 222  Q
    |||||||||||    
T  2815155 gaataatctac 2815165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 42587576 - 42587369
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||||  ||||||||| || || ||||||||    
T  42587576 gctcactttgcagttcattttctgcaaagactacatctctgctaacaacaagcttgtgagcagtgggatcccacaagcgataccctttcacgttgtcagc 42587477  T
Q  112 ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa 211  Q
    |||||||||||| |||||||| || |||||| | || | |||||||||||||||||||||||||||  ||||||||| ||| || ||||||||||  |||    
T  42587476 ataacccaagaatatacattttctagactttggatctagctttgttctttcttgggagttgtacattgcgtacacagtacatccgaacacatgtaaggaa 42587377  T
Q  212 gaataatc 219  Q
    ||||||||    
T  42587376 gaataatc 42587369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 828100 - 827894
Alignment:
Q  16 actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagcataa 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  828100 actttgcagttcattttctgcaaagactagatccctgctaacaacaaccttgcgggtagtgggatcccacaggcgataccccttaacattgtcagcataa 828001  T
Q  116 cccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaagaat 215  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  828000 cccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgcagagaagaat 827901  T
Q  216 aatctac 222  Q
    |||||||    
T  827900 aatctac 827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 9441787 - 9441994
Alignment:
Q  16 actttgcagttcattttct-gcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagcata 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9441787 actttgcagttcattttcttgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcata 9441886  T
Q  115 acccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaagaa 214  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  9441887 acccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggacaaccaaacacatgcagagaagaa 9441986  T
Q  215 taatctac 222  Q
    ||||||||    
T  9441987 taatctac 9441994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 24596180 - 24596387
Alignment:
Q  12 gctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaccggcgataccccttaacattgtcagc 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||||||   ||||||||| || || ||||||||    
T  24596180 gctcactttgcagttcattttctgcaaagactacatctctgctaacaacaagcttgtgagcagtgggatcccataagcgataccctttcacgttgtcagc 24596279  T
Q  112 ataacccaagaagatacatttcctggactttcggtccaactttgttctttcttgggagttgtacatcacgtacacaggacaaccaaacacatgtagagaa 211  Q
    |||||||||||| |||||||| || |||||| | || | |||||||||||||||||||||||||||  ||||||||| ||| || ||||||||||  |||    
T  24596280 ataacccaagaatatacattttctagactttggatctagctttgttctttcttgggagttgtacattgcgtacacagtacatccgaacacatgtaaggaa 24596379  T
Q  212 gaataatc 219  Q
    ||||||||    
T  24596380 gaataatc 24596387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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