View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8566_low_37 (Length: 226)

Name: NF8566_low_37
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8566_low_37
NF8566_low_37
[»] chr5 (3 HSPs)
chr5 (14-210)||(42784416-42784613)
chr5 (69-179)||(5520554-5520662)
chr5 (71-178)||(15597591-15597698)
[»] chr8 (3 HSPs)
chr8 (14-179)||(18981360-18981525)
chr8 (70-210)||(4707612-4707753)
chr8 (122-179)||(26918450-26918507)
[»] chr6 (10 HSPs)
chr6 (14-179)||(22012910-22013075)
chr6 (14-179)||(27526189-27526356)
chr6 (73-181)||(27650011-27650112)
chr6 (98-178)||(13142978-13143058)
chr6 (75-178)||(27683377-27683481)
chr6 (75-178)||(27690698-27690802)
chr6 (70-179)||(9821613-9821722)
chr6 (75-179)||(17354762-17354867)
chr6 (15-57)||(27650115-27650157)
chr6 (122-178)||(28039675-28039731)
[»] chr2 (11 HSPs)
chr2 (15-179)||(2587173-2587337)
chr2 (14-179)||(44323016-44323183)
chr2 (91-179)||(44314837-44314925)
chr2 (69-179)||(10414823-10414933)
chr2 (72-177)||(15001835-15001940)
chr2 (70-210)||(809803-809946)
chr2 (123-179)||(31713226-31713282)
chr2 (123-179)||(45330914-45330970)
chr2 (69-179)||(39155772-39155883)
chr2 (142-179)||(4405020-4405057)
chr2 (141-181)||(1775493-1775533)
[»] chr3 (5 HSPs)
chr3 (14-178)||(28059365-28059527)
chr3 (14-178)||(28069790-28069952)
chr3 (15-178)||(5706615-5706775)
chr3 (98-177)||(9437009-9437088)
chr3 (69-179)||(19433944-19434054)
[»] chr1 (6 HSPs)
chr1 (14-179)||(14649227-14649396)
chr1 (14-179)||(14659017-14659186)
chr1 (14-176)||(42565065-42565227)
chr1 (69-179)||(29290145-29290255)
chr1 (69-210)||(47051658-47051800)
chr1 (70-179)||(17654496-17654605)
[»] chr4 (4 HSPs)
chr4 (69-179)||(54352939-54353047)
chr4 (74-146)||(5359748-5359820)
chr4 (122-180)||(11513806-11513863)
chr4 (69-181)||(27562271-27562384)
[»] chr7 (6 HSPs)
chr7 (69-178)||(28802534-28802643)
chr7 (98-181)||(36265549-36265632)
chr7 (127-178)||(19670504-19670555)
chr7 (91-182)||(8387864-8387954)
chr7 (122-177)||(30943351-30943406)
chr7 (151-179)||(6023408-6023436)
[»] scaffold0713 (1 HSPs)
scaffold0713 (70-177)||(4060-4167)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 42784613 - 42784416
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaatactttcacttat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||||||||| ||||||    
T  42784613 cagagaccataataatattcatgaccttaaacatcaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaacttat 42784514  T
Q  114 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca-acatgacgaaagaactcaattcttagtgatg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  42784513 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacagatatgacgaaagaactcaattcctagtgatg 42784416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 5520554 - 5520662
Alignment:
Q  69 tgttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 168  Q
    ||||||||||||||  | ||| |||| | ||| ||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5520554 tgttcaaagggtgt--tccccatttttataaacactttaacatacaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtc 5520651  T
Q  169 atcaactcaca 179  Q
    |||||||||||    
T  5520652 atcaactcaca 5520662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 15597698 - 15597591
Alignment:
Q  71 ttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcat 170  Q
    ||||||||||||||| ||| |||| | ||||||||| || ||||||||||  ||||||| |||||||  |||||| ||||||||||||||||||||||||    
T  15597698 ttcaaagggtgtgttccccatttttataaatactttaacatataaaatcataaaaatattaataataaagataatgaaaataagtgataatgatcgtcat 15597599  T
Q  171 caactcac 178  Q
    ||||||||    
T  15597598 caactcac 15597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 18981525 - 18981360
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaatactttcacttat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||||||||| ||||||    
T  18981525 cagagaccataataatattcatgaccttaaacatcaatttcaacgatgagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaacttat 18981426  T
Q  114 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18981425 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcatcatcaactcaca 18981360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 210
Target Start/End: Original strand, 4707612 - 4707753
Alignment:
Q  70 gttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtca 169  Q
    |||||||||||||||| ||| |||| | ||| ||||| || || ||||| | |||| |||||||||||   |||   |||||| | |||||||||||| |    
T  4707612 gttcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaagtatcaataatattaatagggaaaatatgcgataatgatcgtta 4707711  T
Q  170 tcaactcaca-acatgacgaaagaactcaattcttagtgatg 210  Q
    |||||||||| | |||||||||||||||||||| ||||||||    
T  4707712 tcaactcacagatatgacgaaagaactcaattcctagtgatg 4707753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 26918450 - 26918507
Alignment:
Q  122 caaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  26918450 caaaatatcaataataatgataattaaaataattgataatgatcgtcatcaactcaca 26918507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 22013075 - 22012910
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaatactttcacttat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||||||||| ||||||    
T  22013075 cagagaccataataatattcatgaccttaaacatcaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaacttat 22012976  T
Q  114 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22012975 aaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 22012910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 27526356 - 27526189
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnn--tgttcaaagggtgtgtttcccgttttgagaaatactttcactt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||| ||| |||||| |||||||||||||||||||||| ||||    
T  27526356 cagagaccataataatattcatgaccttaaacatcaatttcaacgataaaaaaaaaatgtttaaaaggtgtgcttcccgttttgagaaatactttaactt 27526257  T
Q  112 ataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27526256 ataaaattaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 27526189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 27650112 - 27650011
Alignment:
Q  73 caaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatca 172  Q
    ||||||||||| ||||| |||||  ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||       |||||||||||    
T  27650112 caaagggtgtgcttcccattttggtaaatactttaacttataaaattaccaaaatatcaataataacgataattaaaataag-------gatcgtcatca 27650020  T
Q  173 actcacaac 181  Q
    |||||||||    
T  27650019 actcacaac 27650011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 13142978 - 13143058
Alignment:
Q  98 aaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 178  Q
    ||||||||| || ||||||||||  ||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||    
T  13142978 aaatactttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcgataatgatcgtcatcaactcac 13143058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 27683481 - 27683377
Alignment:
Q  75 aagggtgtgtttcccgttttgagaaatactttca-cttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaa 173  Q
    ||||||||||| ||| ||||   ||||||||| | | ||||||||||  ||||||||||||||| ||||| | ||||||||  |||||||||||||||||    
T  27683481 aagggtgtgttccccatttttgtaaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaa 27683382  T
Q  174 ctcac 178  Q
    |||||    
T  27683381 ctcac 27683377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 27690802 - 27690698
Alignment:
Q  75 aagggtgtgtttcccgttttgagaaatactttca-cttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaa 173  Q
    ||||||||||| ||| ||||   ||||||||| | | ||||||||||  ||||||||||||||| ||||| | ||||||||  |||||||||||||||||    
T  27690802 aagggtgtgttccccatttttgtaaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaa 27690703  T
Q  174 ctcac 178  Q
    |||||    
T  27690702 ctcac 27690698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 9821722 - 9821613
Alignment:
Q  70 gttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtca 169  Q
    |||||||||||||||| ||| |||| | ||| ||||| || |||||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |    
T  9821722 gttcaaagggtgtgttccccatttttataaacactttaacatataaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgtta 9821623  T
Q  170 tcaactcaca 179  Q
    ||||||||||    
T  9821622 tcaactcaca 9821613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 17354867 - 17354762
Alignment:
Q  75 aagggtgtgtttcccgttttgagaaatactttca-cttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaa 173  Q
    ||||||||||| ||| ||||   ||||||||| | | ||||||||||  ||||||||||||||| ||||| | ||||||||  ||||||||||| |||||    
T  17354867 aagggtgtgttccccatttttgtaaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtaatcaa 17354768  T
Q  174 ctcaca 179  Q
    ||||||    
T  17354767 ctcaca 17354762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 27650157 - 27650115
Alignment:
Q  15 agagaccataataatattcatgaccttaaacatcaatttcaac 57  Q
    ||||||||||  ||||||||||||||||||||| |||||||||    
T  27650157 agagaccatatcaatattcatgaccttaaacataaatttcaac 27650115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 28039731 - 28039675
Alignment:
Q  122 caaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 178  Q
    ||||||||||||||||   ||| | |||||| |||||||||||||| ||||||||||    
T  28039731 caaaatatcaataatattaatagtaaaaatatgtgataatgatcgttatcaactcac 28039675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 2587337 - 2587173
Alignment:
Q  15 agagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaatactttcacttata 114  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||        ||||||||||||||| |||||||||||||||||||||| |||||||    
T  2587337 agagaccataataataatcatgaccttaaacattaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaacttata 2587238  T
Q  115 aaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2587237 aaatcaccaaaatatcaataatagagataattaaaataagtgataatgatcgtcatcaactcaca 2587173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 44323183 - 44323016
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnn--tgttcaaagggtgtgtttcccgttttgagaaatactttcactt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||| ||| |||||| |||||||||||||||||||||| ||||    
T  44323183 cagagaccataataatattcatgaccttaaacatcaatttcaacgataaaaaaaaaatgtttaaaaggtgtgcttcccgttttgagaaatactttaactt 44323084  T
Q  112 ataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44323083 ataaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 44323016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 44314925 - 44314837
Alignment:
Q  91 ttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44314925 ttttgagaaatactttaacttataaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 44314837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 10414933 - 10414823
Alignment:
Q  69 tgttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 168  Q
    |||||||| |||| ||| |||  ||||| ||||||||| || ||||||||||  |||||| |||||||| ||||| | |||||||| |||||||||||||    
T  10414933 tgttcaaaaggtgcgttccccaatttgataaatactttaacatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatgatcgtc 10414834  T
Q  169 atcaactcaca 179  Q
    |||||||||||    
T  10414833 atcaactcaca 10414823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 15001835 - 15001940
Alignment:
Q  72 tcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatc 171  Q
    |||||||||||||| ||| |||| | ||| ||||| || || ||||| | ||||||||||||||||   ||| | |||||| |||||||||||||| |||    
T  15001835 tcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatc 15001934  T
Q  172 aactca 177  Q
    ||||||    
T  15001935 aactca 15001940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 210
Target Start/End: Original strand, 809803 - 809946
Alignment:
Q  70 gttcaaagggtgtgtttcccgttttg--agaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgt 167  Q
    |||||||||||||||| ||| ||||   | ||| ||||| || || ||||| | ||||||||||||||||   |||   |||||| | ||||||||||||    
T  809803 gttcaaagggtgtgttccccatttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgt 809902  T
Q  168 catcaactcaca-acatgacgaaagaactcaattcttagtgatg 210  Q
     ||||||||||| | |||||||||||||||||||| ||| ||||    
T  809903 tatcaactcacagatatgacgaaagaactcaattcctagggatg 809946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 31713282 - 31713226
Alignment:
Q  123 aaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    ||||||||||||||| ||||| | |||||||| |||||||||||||| |||||||||    
T  31713282 aaaatatcaataataacgatattgaaaataagcgataatgatcgtcaccaactcaca 31713226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 45330970 - 45330914
Alignment:
Q  123 aaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    |||||||||| |||||| ||||| ||||||| ||||||||||||||||||| |||||    
T  45330970 aaaatatcaacaatagcaataatcaaaataaatgataatgatcgtcatcaattcaca 45330914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 39155772 - 39155883
Alignment:
Q  69 tgttcaaagggtgtgtttcccgttttg-agaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgt 167  Q
    ||||||||||| ||||| ||| ||||  | ||| ||||| || || ||||| | ||||||||||||||||   ||| | |||||| ||||||||||||||    
T  39155772 tgttcaaagggcgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgt 39155871  T
Q  168 catcaactcaca 179  Q
     |||||||||||    
T  39155872 tatcaactcaca 39155883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 4405057 - 4405020
Alignment:
Q  142 taattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  4405057 taattaaaataagcgataatgatcgttatcaactcaca 4405020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 1775533 - 1775493
Alignment:
Q  141 ataattaaaataagtgataatgatcgtcatcaactcacaac 181  Q
    |||||||||||| ||||||||||||||||| ||||| ||||    
T  1775533 ataattaaaatatgtgataatgatcgtcataaactcgcaac 1775493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 28059365 - 28059527
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaatactttcacttat 113  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||        ||||||||||||||| |||||||||||||||||||||| | ||||    
T  28059365 cagagaccataataatattcatgacctta--catcaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaaattat 28059462  T
Q  114 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28059463 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 28059527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 28069790 - 28069952
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaatactttcacttat 113  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||        ||||||||||||||| |||||||||||||||||||||| | ||||    
T  28069790 cagagaccataataatattcatgacctta--catcaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaaattat 28069887  T
Q  114 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28069888 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 28069952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 5706615 - 5706775
Alignment:
Q  15 agagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttg-agaaatactttcacttat 113  Q
    |||||||||| ||||||||| |||||||||||| ||||||||| |         | || |||||||||||| ||| ||||  | ||||||||| ||||||    
T  5706615 agagaccatattaatattcacgaccttaaacat-aatttcaacaacaagaaaaatattgaaagggtgtgttccccattttttataaatactttaacttat 5706713  T
Q  114 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 178  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||    
T  5706714 aaaataaccaaaatatcaataataacgataattaaaataagtgata---atcgtcatcaactcac 5706775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 9437009 - 9437088
Alignment:
Q  98 aaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactca 177  Q
    ||||||||| || ||||||||||  ||| |||||||||||  |||||| |||||||||||||||||||| ||||||||||    
T  9437009 aaatactttaacatataaaatcataaaattatcaataataatgataatgaaaataagtgataatgatcgccatcaactca 9437088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 19434054 - 19433944
Alignment:
Q  69 tgttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 168  Q
    |||||||||||  |||| ||| |||| | ||| ||||| |  || ||||| | ||||||||||||||||   ||| | |||||| ||||||||||||||     
T  19434054 tgttcaaagggcatgttccccatttttataaacactttaagatagaaaattatcaaaatatcaataatattaatagtaaaaatatgtgataatgatcgtt 19433955  T
Q  169 atcaactcaca 179  Q
    |||||||||||    
T  19433954 atcaactcaca 19433944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 14649396 - 14649227
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnn----tgttcaaagggtgtgtttcccgttttgagaaatactttcac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||| ||||| |||||||||||||||| ||    
T  14649396 cagagaccataataatattcatgaccttaaacatcaatttcaacgataaaaaaaaaaaatgttcaaagggtgtgcttcccattttgagaaatactttaac 14649297  T
Q  110 ttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14649296 ttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 14649227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 14659186 - 14659017
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnn----tgttcaaagggtgtgtttcccgttttgagaaatactttcac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||| ||||| |||||||||||||||| ||    
T  14659186 cagagaccataataatattcatgaccttaaacatcaatttcaacgataaaaaaaaaaaatgttcaaagggtgtgcttcccattttgagaaatactttaac 14659087  T
Q  110 ttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14659086 ttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 14659017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 42565227 - 42565065
Alignment:
Q  14 cagagaccataataatattcatgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaatactttcacttat 113  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||| || || |||||||||||||||| ||||||    
T  42565227 cagagaccataataattttcatgaccttaaacatcaatttcaacgataagaaaaatgttcaaagggtgtgctttccattttgagaaatactttaacttat 42565128  T
Q  114 aaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactc 176  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  42565127 aaaatcaccaaaataccaataatagcgataattaaaataagtgataataatcgtcatcaactc 42565065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 29290145 - 29290255
Alignment:
Q  69 tgttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 168  Q
    |||||||| |||||||| |||  ||||| ||||||||| |  ||||||||||  |||||| |||||||| ||||| | |||||||| |||||||||||||    
T  29290145 tgttcaaaaggtgtgttccccaatttgataaatactttaaaatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatgatcgtc 29290244  T
Q  169 atcaactcaca 179  Q
    |||||||||||    
T  29290245 atcaactcaca 29290255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 47051658 - 47051800
Alignment:
Q  69 tgttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 168  Q
    ||||||||||||||||| ||| ||||   ||| ||||| || || ||||| | ||||||||||||||||   ||| | ||||||  |||||||||||||     
T  47051658 tgttcaaagggtgtgttccccattttataaaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatatgataatgatcgtt 47051757  T
Q  169 atcaactcaca-acatgacgaaagaactcaattcttagtgatg 210  Q
    ||||||||||| | |||||||||||||||||||| ||||||||    
T  47051758 atcaactcacagatatgacgaaagaactcaattcctagtgatg 47051800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 17654496 - 17654605
Alignment:
Q  70 gttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtca 169  Q
    |||||||||||||||| ||| |||| | ||| ||||| || || ||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |    
T  17654496 gttcaaagggtgtgttccccatttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgtta 17654595  T
Q  170 tcaactcaca 179  Q
    ||||||||||    
T  17654596 tcaactcaca 17654605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 54352939 - 54353047
Alignment:
Q  69 tgttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 168  Q
    ||||||||||||||  | ||| |||| | ||| ||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54352939 tgttcaaagggtgt--tccccatttttataaacactttaacatagaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtc 54353036  T
Q  169 atcaactcaca 179  Q
    |||||||||||    
T  54353037 atcaactcaca 54353047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 5359748 - 5359820
Alignment:
Q  74 aaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataatt 146  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||| ||||||| |||||||| | ||||||    
T  5359748 aaagggtgtgcttcccgttttgataaatactttaacttataaaatcatcaaaataacaataataacaataatt 5359820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 11513806 - 11513863
Alignment:
Q  122 caaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacaa 180  Q
    |||||||||||||||| | ||||| ||||||  ||||||||||||||||||||||||||    
T  11513806 caaaatatcaataataacaataatcaaaatat-tgataatgatcgtcatcaactcacaa 11513863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 27562271 - 27562384
Alignment:
Q  69 tgttcaaagggtgtgtttcccgttttg-agaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgt 167  Q
    ||||||||||| ||||| ||| ||||  | ||| ||||| || || ||||| | ||||||||||||||||   ||| | |||||| ||||||||||||||    
T  27562271 tgttcaaagggcgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgt 27562370  T
Q  168 catcaactcacaac 181  Q
     |||||||||||||    
T  27562371 tatcaactcacaac 27562384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 28802643 - 28802534
Alignment:
Q  69 tgttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 168  Q
    ||||||||| ||||||| ||| |||| | ||| ||||| || ||||||||||  ||||||||||||||| ||||||| |||||| |||||||||||||||    
T  28802643 tgttcaaagagtgtgttccccatttttataaacactttaacatataaaatcataaaaatatcaataataacgataatgaaaatatgtgataatgatcgtc 28802544  T
Q  169 atcaactcac 178  Q
    ||||||||||    
T  28802543 atcaactcac 28802534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 36265549 - 36265632
Alignment:
Q  98 aaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacaac 181  Q
    ||||||||| || ||||||||||  ||||||||||||||| ||||||  ||||||||||||||||||| |||||||||||||||    
T  36265549 aaatactttaacatataaaatcataaaaatatcaataataacgataaggaaaataagtgataatgatcctcatcaactcacaac 36265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 19670504 - 19670555
Alignment:
Q  127 tatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 178  Q
    ||||||||||| | |||||||||||| |||||| ||||||||||||||||||    
T  19670504 tatcaataataacaataattaaaatatgtgatattgatcgtcatcaactcac 19670555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 8387864 - 8387954
Alignment:
Q  91 ttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacaaca 182  Q
    |||||||||||||||| || || ||||| | ||||||||||||  || | ||||||||| |||||| ||||||| | |||||||| ||||||    
T  8387864 ttttgagaaatactttaacatagaaaataaacaaaatatcaat-ttaacaataattaaattaagtgttaatgattgccatcaactaacaaca 8387954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 30943406 - 30943351
Alignment:
Q  122 caaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactca 177  Q
    |||||||||||||||| | ||||||||||||  |||||||||| || |||||||||    
T  30943406 caaaatatcaataataacaataattaaaatatatgataatgattgttatcaactca 30943351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 6023408 - 6023436
Alignment:
Q  151 taagtgataatgatcgtcatcaactcaca 179  Q
    |||||||||||||||||||||||||||||    
T  6023408 taagtgataatgatcgtcatcaactcaca 6023436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 4167 - 4060
Alignment:
Q  70 gttcaaagggtgtgtttcccgttttgagaaatactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtca 169  Q
    |||||||||||||||| ||| |||| | ||| ||||| || || ||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |    
T  4167 gttcaaagggtgtgttccccatttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgtta 4068  T
Q  170 tcaactca 177  Q
    ||||||||    
T  4067 tcaactca 4060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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