View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8566_low_38 (Length: 225)

Name: NF8566_low_38
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8566_low_38
NF8566_low_38
[»] chr1 (4 HSPs)
chr1 (1-213)||(4679230-4679442)
chr1 (34-101)||(29465162-29465229)
chr1 (141-195)||(15594455-15594509)
chr1 (134-194)||(29465262-29465322)
[»] chr7 (11 HSPs)
chr7 (1-188)||(1300735-1300925)
chr7 (1-188)||(8658640-8658830)
chr7 (107-188)||(8646263-8646344)
chr7 (142-195)||(8586400-8586453)
chr7 (1-101)||(8666696-8666796)
chr7 (139-188)||(3146682-3146731)
chr7 (1-101)||(10495162-10495262)
chr7 (85-194)||(8616076-8616188)
chr7 (1-101)||(13334156-13334256)
chr7 (140-214)||(8653863-8653937)
chr7 (134-188)||(8666829-8666883)
[»] chr2 (4 HSPs)
chr2 (1-195)||(16658214-16658411)
chr2 (128-196)||(43624819-43624887)
chr2 (140-194)||(7541645-7541699)
chr2 (139-199)||(12246096-12246156)
[»] chr8 (1 HSPs)
chr8 (128-194)||(43744223-43744289)
[»] chr5 (1 HSPs)
chr5 (129-188)||(28219326-28219385)
[»] chr4 (2 HSPs)
chr4 (139-188)||(9336595-9336644)
chr4 (139-194)||(30774670-30774725)
[»] chr3 (2 HSPs)
chr3 (139-187)||(53416761-53416809)
chr3 (5-80)||(53417489-53417564)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4679442 - 4679230
Alignment:
Q  1 tcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679442 tcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagg 4679343  T
Q  101 gtgtgtcacgaggagcatctggacacaaaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaattaaggt 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4679342 gtgtgccacgaggagcatctggacacaaaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaataaaggt 4679243  T
Q  201 accagaattatct 213  Q
    | |||||||||||    
T  4679242 atcagaattatct 4679230  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 29465162 - 29465229
Alignment:
Q  34 gtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaaggg 101  Q
    ||||| ||||| ||||||| |||||||||| |||||||| |||| || | ||||||||||||||||||    
T  29465162 gtagatatttccttagcagtaacagttaggatgccattttcatcaatggaaaagcatacctccaaggg 29465229  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 15594455 - 15594509
Alignment:
Q  141 accaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaatt 195  Q
    |||||||| ||| |||||  | |||||||||||||||||||||||||||| ||||    
T  15594455 accaagcaaattattgtcactagctcttgctctctcaccctcataaacctgaatt 15594509  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 29465262 - 29465322
Alignment:
Q  134 caaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaat 194  Q
    |||| |||||||||||||  |||||  | ||||||||||||||||||||||| ||| ||||    
T  29465262 caaatgaaccaagcagataattgtcactagctcttgctctctcaccctcatataccctaat 29465322  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 1300735 - 1300925
Alignment:
Q  1 tcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagg 100  Q
    |||||| | ||||||||||  ||||||||||||||||| ||||| || |||||||| ||||   |||||||| ||| ||||| ||| |||||||||||||    
T  1300735 tcattgttgatggtgatctgattcgtatttcctgtagatatttccttggcagaaactgttaaaatgccattttcatttatagaaaaacatacctccaagg 1300834  T
Q  101 gtgtgtcacgaggagcatctggacaca---aaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 188  Q
    | ||| ||||||||||| || |||  |   |||| |  ||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  1300835 gggtgccacgaggagcacctcgacggatagaaagcttgaacgaaccaagcagattgttgtcttgcgctcttgctctctcaccctcataaac 1300925  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 8658640 - 8658830
Alignment:
Q  1 tcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagg 100  Q
    |||||| |||||||||||| |||| ||||||||| ||| ||||| ||||| ||||| ||||   |||||||| |||  || | ||| |||||||||||||    
T  8658640 tcattgtttatggtgatctggttcatatttcctgaagatatttccttagccgaaactgttaaaatgccattttcattgattgaaaaacatacctccaagg 8658739  T
Q  101 gtgtgtcacgaggagcatctgga---cacaaaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 188  Q
    | ||| ||||||||||| |||||   ||  |||| |  ||||||||||||||||||||||||   |||||||||||||||||||| |||||    
T  8658740 gagtgccacgaggagcacctggacggcaagaaagtttgaacgaaccaagcagattgttgtctagcgctcttgctctctcaccctcgtaaac 8658830  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 8646263 - 8646344
Alignment:
Q  107 cacgaggagcatctggacacaaaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 188  Q
    ||||||||||| ||||   | |||||| ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  8646263 cacgaggagcagctgggagccaaagattaaaagaaccaagcagattgttgtcacttgctcttgctctctcaccctcataaac 8646344  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 8586453 - 8586400
Alignment:
Q  142 ccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaatt 195  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  8586453 ccaagcagattgttgtcactagctcttgctctctcaccctcataaaccttaatt 8586400  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8666696 - 8666796
Alignment:
Q  1 tcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagg 100  Q
    |||||||||||||||||| ||||| |||| ||||| || |||||  |||||| |||||| ||| | |||||| |||| || | |||||||||||||||||    
T  8666696 tcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggataccattttcatcaattgaaaagcatacctccaagg 8666795  T
Q  101 g 101  Q
    |    
T  8666796 g 8666796  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 3146682 - 3146731
Alignment:
Q  139 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 188  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  3146682 gaaccaagcagattgttgtcactagctcttgctctctcaccctcataaac 3146731  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10495262 - 10495162
Alignment:
Q  1 tcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagg 100  Q
    ||||| || |||||||||  |||| |||| |||||||| || || ||||||| |||||| ||| |||||||| |||| || | |||||||||||||||||    
T  10495262 tcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttcatcaatggaaaagcatacctccaagg 10495163  T
Q  101 g 101  Q
    |    
T  10495162 g 10495162  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 8616076 - 8616188
Alignment:
Q  85 aagcatacctccaagggtgtgtcacgaggagcatctgga---cacaaaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccct 181  Q
    |||||||||||||||||   ||||| ||||||| | |||   ||| |||||| |||  | |||||||||||||||||  | ||||||| |||||||||||    
T  8616076 aagcatacctccaagggatggtcacaaggagcaccaggagtgcacgaaagataaaaaaatccaagcagattgttgtcactagctcttgatctctcaccct 8616175  T
Q  182 cataaaccttaat 194  Q
    |||||| ||||||    
T  8616176 cataaaacttaat 8616188  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13334256 - 13334156
Alignment:
Q  1 tcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagg 100  Q
    ||||| || |||||||||  |||| |||| |||||||| || || ||||||| ||| || ||| |||||||| |||| || | |||||||||||||||||    
T  13334256 tcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaaccgtcaggatgccattttcatcaatggaaaagcatacctccaagg 13334157  T
Q  101 g 101  Q
    |    
T  13334156 g 13334156  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 8653863 - 8653937
Alignment:
Q  140 aaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaattaaggtaccagaattatcta 214  Q
    ||||||||||||| |||||  | ||||||| ||||||||||||||||||  ||||  ||| |||| |||||||||    
T  8653863 aaccaagcagattattgtcactagctcttggtctctcaccctcataaacaataatagaggcaccacaattatcta 8653937  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 8666829 - 8666883
Alignment:
Q  134 caaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 188  Q
    |||| |||||||||||||| ||||| |  ||||||| ||||||||||||||||||    
T  8666829 caaatgaaccaagcagattattgtcagcagctcttggtctctcaccctcataaac 8666883  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 16658411 - 16658214
Alignment:
Q  1 tcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaagg 100  Q
    ||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||| | |||||| |||| |   |||| ||||| || ||||    
T  16658411 tcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttaggataccattttcatcgaggtcaaaacatacatctaagg 16658312  T
Q  101 gtgtgtcacgaggagcatctgga---cacaaaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaatt 195  Q
    ||  | | ||||||||| |||||   ||  ||||    ||  |||| |||||||| ||||| |  |||||||||||||||||||||||||| ||||||    
T  16658311 gttggccccgaggagcacctggaacgcaagaaaggctgaaaaaaccgagcagattattgtcagcagctcttgctctctcaccctcataaacattaatt 16658214  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 43624819 - 43624887
Alignment:
Q  128 aaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaatta 196  Q
    |||||| ||| ||||||| ||||||||||||  || ||| ||||||||||| ||||||||||| |||||    
T  43624819 aaagattaaaagaaccaatcagattgttgtcacttactcatgctctctcacactcataaacctcaatta 43624887  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 7541645 - 7541699
Alignment:
Q  140 aaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaat 194  Q
    ||||||||| |||||| ||  | |||||||||||||||||||||||||| |||||    
T  7541645 aaccaagcaaattgttatcactggctcttgctctctcaccctcataaacattaat 7541699  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 12246156 - 12246096
Alignment:
Q  139 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaattaagg 199  Q
    |||||||||| |||||||||  | ||| ||| |||||||||||| ||||||||||| ||||    
T  12246156 gaaccaagcaaattgttgtcactggcttttgttctctcaccctcgtaaaccttaatcaagg 12246096  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 43744223 - 43744289
Alignment:
Q  128 aaagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaat 194  Q
    ||||| |||| ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  43744223 aaagagcaaaagaaccaagcagattgttgtcacttgctcttgctctctcaccctcataaactttaat 43744289  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 28219326 - 28219385
Alignment:
Q  129 aagatcaaacgaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 188  Q
    ||||||||| ||||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  28219326 aagatcaaaagaaccaagcagattgttgtcacttgcttttgctctctcaccctcataaac 28219385  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 9336644 - 9336595
Alignment:
Q  139 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaac 188  Q
    |||||||||||||| ||||| || ||||||| ||||||||||||||||||    
T  9336644 gaaccaagcagattattgtcagtagctcttggtctctcaccctcataaac 9336595  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 30774670 - 30774725
Alignment:
Q  139 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaaccttaat 194  Q
    ||||| |||||||||||||| |   ||||||||||||||||||||||||| |||||    
T  30774670 gaacctagcagattgttgtccgcgactcttgctctctcaccctcataaacattaat 30774725  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 53416809 - 53416761
Alignment:
Q  139 gaaccaagcagattgttgtctgttgctcttgctctctcaccctcataaa 187  Q
    |||||||||||||| ||||| || ||||||| |||||||||||||||||    
T  53416809 gaaccaagcagattattgtcagtagctcttggtctctcaccctcataaa 53416761  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 53417489 - 53417564
Alignment:
Q  5 tggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctat 80  Q
    ||||||||||||||| |||| |||||| | |||  ||||| ||||||||||| |||||| | |||||| |||||||    
T  53417489 tggttatggtgatctcgttcttatttcttctagttatttccttagcagaaacggttaggataccattttcatctat 53417564  T

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