View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8566_low_4 (Length: 569)
Name: NF8566_low_4
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Complemental strand, 45616599 - 45616170
Alignment:
| Q |
17 |
atctcatgcgtttgctagccaaatactgcaaactcatttgcaacatggtactgacagtgttaattagtggttttaatgaacaagcaagagctgaattaaa |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45616599 |
atctcatgcgtttggtagccaaatactgcaaactcatttgcaacatggtactgacagtgttaattagtggttt-aatgaacaagcaagagctgaattaaa |
45616501 |
T |
|
| Q |
117 |
catcttatatagcacattgttgccaccatgttccaatgagtagagacaaaattacatcattttaaaacatgaaaacacatggttataaatcaatcacgtt |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45616500 |
catcttatataacacattgttgccaccatgttccaatgagtagagacaaaattacatcatttt-aaacatgaaaacacatggttataaatcaatcacgtt |
45616402 |
T |
|
| Q |
217 |
gtatattcagagtctataacttgttcggttattcttagaaatccaaattaat--tagttggtgggtaaaggaatatttgatgcatgtgcaatgattgatg |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45616401 |
gtatattcagagtctataacttgttctgttattcttagaaatccaaattaattatagttggtgggtaaaggaatatttgatgcatgtgcaatgattggtg |
45616302 |
T |
|
| Q |
315 |
atatataagctaaagccaatcatttgttcaactatggaatgtatgtggctgttaatttggtagcaaagaaagatctaattaa-ttaatctaagtttgttt |
413 |
Q |
| |
|
|||| | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
45616301 |
gtata-atgctaaagccaatcatttgtttagctatggaatgtatgtggctgttaatttggtagcaaagaaatatctaattaatttaattcaagtttgttt |
45616203 |
T |
|
| Q |
414 |
gatagaaactgtcacaaaatcaagtcaatcaac |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
45616202 |
gatagaaactgtcacaaaatcaagtcaatcaac |
45616170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 494 - 553
Target Start/End: Complemental strand, 45616122 - 45616062
Alignment:
| Q |
494 |
gtgcctactaattactcttattgtttagtctatgatttaa-tattttatttttgactgatg |
553 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
45616122 |
gtgcctactaattactcttaatgtttagtctatgatttaagtatcttatttttgactgatg |
45616062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University