View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8566_low_40 (Length: 207)
Name: NF8566_low_40
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 1372222 - 1372351
Alignment:
| Q |
61 |
ataaatagcctatttctatggtgcttatgataaaccatttaaaacagaatggcaaactatgtcaatctcctcctttttaccttcgcaattgtgtgcattg |
160 |
Q |
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| T |
1372222 |
ataaatagcctatttctatggtgcttatgataaacaatttaaaacagaatggcaacctatgtcaatctcctcctttttaccttcgcaattgtgtgcattg |
1372321 |
T |
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| Q |
161 |
cttcgtatgtgattccaggtaacacaactt |
190 |
Q |
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| T |
1372322 |
cttcgtatgtgattccaggtaacacaactt |
1372351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 1379970 - 1380099
Alignment:
| Q |
61 |
ataaatagcctatttctatggtgcttatgataaaccatttaaaacagaatggcaaactatgtcaatctcctcctttttaccttcgcaattgtgtgcattg |
160 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1379970 |
ataaatagcctatttctatggtgcttatgataaacaatttaaaacagaatggcaacctatgtcaatctcctcctttttaccttcgcaattgtgtgcattg |
1380069 |
T |
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| Q |
161 |
cttcgtatgtgattccaggtaacacaactt |
190 |
Q |
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| T |
1380070 |
cttcgtatgtgattccaggtaacacaactt |
1380099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 1375019 - 1375148
Alignment:
| Q |
61 |
ataaatagcctatttctatggtgcttatgataaaccatttaaaacagaatggcaaactatgtcaatctcctcctttttaccttcgcaattgtgtgcattg |
160 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1375019 |
ataaatagcctatttctatggtgctcatgataaacaatttaaaacagaatggcaacctatgtcaatctcctcctttttaccttcgcaattgtgtgcattg |
1375118 |
T |
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| Q |
161 |
cttcgtatgtgattccaggtaacacaactt |
190 |
Q |
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| T |
1375119 |
cttcgtatgtgattccaggtaacacaactt |
1375148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 1382767 - 1382896
Alignment:
| Q |
61 |
ataaatagcctatttctatggtgcttatgataaaccatttaaaacagaatggcaaactatgtcaatctcctcctttttaccttcgcaattgtgtgcattg |
160 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1382767 |
ataaatagcctatttctatggtgctcatgataaacaatttaaaacagaatggcaacctatgtcaatctcctcctttttaccttcgcaattgtgtgcattg |
1382866 |
T |
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| Q |
161 |
cttcgtatgtgattccaggtaacacaactt |
190 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1382867 |
cttcgtatgtgattccaggtaacacaactt |
1382896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 11308813 - 11308768
Alignment:
| Q |
15 |
tactcattgacaaatcaaataaaacaatgcttctgcattctcttta |
60 |
Q |
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| T |
11308813 |
tactcattgacagatcaaataaaataacgcttctgcattctcttta |
11308768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 11313623 - 11313578
Alignment:
| Q |
15 |
tactcattgacaaatcaaataaaacaatgcttctgcattctcttta |
60 |
Q |
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| T |
11313623 |
tactcattgacagatcaaataaaataacgcttctgcattctcttta |
11313578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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