View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8566_low_6 (Length: 493)
Name: NF8566_low_6
Description: NF8566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8566_low_6 |
 | |
|
| [»] scaffold0478 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0478 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 10 - 469
Target Start/End: Original strand, 11792 - 12251
Alignment:
| Q |
10 |
aatactcctgaggcaagtgtaagaaacgaacccatatttgggcatgagtttgagcctgtgtctgtattgaaaaatcactagaccaacgatagaatcgcat |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11792 |
aatacttctgaggcaagtgtaagaaacgaacccatatttgggcatgagtttgagcctgtctctatattgaaaaatcactagaccaacgatagaatcgcat |
11891 |
T |
|
| Q |
110 |
cagaccagggttcaattgcacaacccccattgcccaaactctgcgcatatcctccacagtgttgaaatgaaactcaaagaagccctttcctagaggagtt |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11892 |
cagaccaaggttcaattgcacaacccccattgcccaaactctacgcatatcctccacagtgttgaaatgaaactcaaagaagccctttcctagaggagtt |
11991 |
T |
|
| Q |
210 |
atatcccaattatgtatatttggccacatattgctcaattgcagcgttaaagccatagtagataaaggagtatcacctctgcgaagtgttaatcttccat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11992 |
atatcccaattatgtatatttggccacatattgctcaattgcagctttaaagccataatagataaaggagtatcacctctgcgaagtgttaaccttccat |
12091 |
T |
|
| Q |
310 |
gaatgttgctgctacagtcaatgagcccagattcatattcggtttgtctgattttgactcgaaccgatttccccatcacaactttcggaggaagttgagt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12092 |
gaatgttgctgctacagtcaatgagcccagattcatattcggtttgtgtgattttgactcgaacggatttccccatcacaactttcggaggaagttgagt |
12191 |
T |
|
| Q |
410 |
aagcttgtagtctttcggtccagcaagtgcctaagcaaatgatattccagattccggggg |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
12192 |
aagcttgtagtctttcggtccagcaagtgcctgagcaaacgatattccagattccggggg |
12251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 10 - 433
Target Start/End: Complemental strand, 26153710 - 26153288
Alignment:
| Q |
10 |
aatactcctgaggcaagtgtaagaaacgaacccatatttgggcatgagtttgagcctgtgtctgtattgaaaaatcactagaccaacgatagaatcgcat |
109 |
Q |
| |
|
||||||| || |||||||||||||||| |||||||||||||| || ||||||||||||| |||| | ||||||||||||||||||| ||||||| |||| |
|
|
| T |
26153710 |
aatactcatggggcaagtgtaagaaacagacccatatttgggcgtgtgtttgagcctgtgcctgtgtagaaaaatcactagaccaacaatagaatagcat |
26153611 |
T |
|
| Q |
110 |
cagaccagggttcaattgcacaacccccattgcccaaactctgcgcatatcctccacagtgttgaaatgaaactcaaagaagccctttcctagaggagtt |
209 |
Q |
| |
|
|| ||| |||||||| | |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
26153610 |
caaaccggggttcaagttcacaacccccattgcccaaactcttcgcatatcctcaacagtattgaaatgaaattcaaaaaagccctttcctagtggagtt |
26153511 |
T |
|
| Q |
210 |
atatcccaattatgtatatttggccacatattgctcaattgcagcgttaaagccatagtagataaaggagtatcacctctgcgaagtgttaatcttccat |
309 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||| | | | |||||||||||||||||||| ||||||||| || | || || || | |||| |
|
|
| T |
26153510 |
atatcccaattatgtatgtttggccacaaattactcaattttaacttcaaagccatagtagataaaggggtatcacctttgtgcagcgtcaa-ccgccat |
26153412 |
T |
|
| Q |
310 |
gaatgttgctgctacagtcaatgagcccagattcatattcggtttgtctgattttgactcgaaccgatttccccatcacaactttcggaggaagttgagt |
409 |
Q |
| |
|
| || |||||||| || |||| | |||||| | | ||||| | |||| ||||||| || |||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
26153411 |
ggatattgctgctgcaatcaacgtgcccagctgcgtattcagattgtatgattttaacgcgaatggttttccccatcacaactttcggaggaagttgagt |
26153312 |
T |
|
| Q |
410 |
aagcttgtagtctttcggtccagc |
433 |
Q |
| |
|
||||| || |||||||| ||||| |
|
|
| T |
26153311 |
aagctgataatctttcggaccagc |
26153288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 21592084 - 21592482
Alignment:
| Q |
10 |
aatactcctgaggcaagtgtaagaaacgaacccatatttgggcatgagtttgagcctgtgtctgtattgaaaaatcactagaccaacgatagaatcgcat |
109 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| || || |||||||||||| |||||| || |||| | ||||||||| | |||||| ||| |
|
|
| T |
21592084 |
aatactcttgaggcaagtgtaagaatcgaacccatatctgagcgtgagtttgagcc----tctgta--gagaaataattagaccaacaaaagaatctcat |
21592177 |
T |
|
| Q |
110 |
cagaccagggttcaattgcacaacccccattgcccaaactctgcgcatatcctccacagtgttgaaatgaaactcaaagaagccctttcctagaggagtt |
209 |
Q |
| |
|
|| ||| || || | | ||||||||||| ||| |||||| ||||||||||| || | ||||| ||||| ||||| || |||||||| | | || |
|
|
| T |
21592178 |
caaacctggttttatgttaacaacccccatagcctaaactcgacgcatatcctcaacggaattgaagtgaaattcaaaaaaaccctttcccaatgatgta |
21592277 |
T |
|
| Q |
210 |
atatcccaattatgtatatttggccacatattgctcaattgcagcgttaaagccatagtagataaaggagtatcacctctgcgaagtgttaatcttccat |
309 |
Q |
| |
|
| |||||| || | || |||||||| | ||| ||||||| | | | ||||||||||| |||||||| |||||||| |||| ||||| || || |||| |
|
|
| T |
21592278 |
agatcccagttgagaatgtttggccataaatttctcaatttcgtcttcaaagccatagtggataaaggggtatcacccttgcgcagtgtcaacctgccat |
21592377 |
T |
|
| Q |
310 |
gaatgttgctgctacagtcaatgagcccagattcatattcggtttgtctgattttgactcgaaccgatttccccatcacaactttcggaggaagttgagt |
409 |
Q |
| |
|
|| ||||| || |||||||| || ||| |||| |||| | ||| ||||||| | || || | ||||||||| ||||| |||||| |||||| || |
|
|
| T |
21592378 |
cgatattgctactgcagtcaatcagtccaaattcgtatttagattgggtgatttttatccgtacagttttccccataacaaccttcggatgaagtttaga |
21592477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 43688740 - 43688682
Alignment:
| Q |
134 |
ccccattgcccaaactctgcgcatatcctccacagtgttgaaatgaaactcaaagaagc |
192 |
Q |
| |
|
|||||| ||||||| | | |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
43688740 |
ccccatagcccaaattttccgcatatcctccactgtgttgaaatggaactcaaagaagc |
43688682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 52314377 - 52314318
Alignment:
| Q |
134 |
ccccattgcccaaactctgcgcatatcctccacagtgttgaaatgaaactcaaagaagcc |
193 |
Q |
| |
|
|||||| ||||||| | | | |||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
52314377 |
ccccatagcccaaattttcctcatatcctccactgtgttgaaatggaactcaaagaagcc |
52314318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University