View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8567_low_1 (Length: 562)
Name: NF8567_low_1
Description: NF8567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8567_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 36397497 - 36396991
Alignment:
| Q |
18 |
caaactttcaccatgtaacgataaaaagcctacgtgatcacgtagtgaattttgttttcgttatcttaaacattaccattgttgtataaaccccaaaaat |
117 |
Q |
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| T |
36397497 |
caaactttcaccatgtaacgataaaaagcctacgtgatcacgtcgtgaattttgttttcgttatcttaaacattaccattgttgtataaaccccaaaaat |
36397398 |
T |
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| Q |
118 |
atcttgact--gtgattgcaattgattgcggacatcaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaat |
215 |
Q |
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| T |
36397397 |
atcttgactctgtgattgcaattgattgcggacatgaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaat |
36397298 |
T |
|
| Q |
216 |
tataaacactaaacagacaatctggattgtgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatt |
315 |
Q |
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| T |
36397297 |
tataaacactaaacagacaatttggattgtgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatt |
36397198 |
T |
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| Q |
316 |
tctgatattttcttcggctccacacatgccatgccaatgtcaaaaacaatcaagttc-ttttatcactacatatgaacaaacacaaacaaaatccattat |
414 |
Q |
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| T |
36397197 |
tctgatattttcttcggctc--cacatgccatgccaatgtcaaaaacaatcaagttctttttatcactgcatatgaacaaacacaaacgaaatccattat |
36397100 |
T |
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| Q |
415 |
aattacatgattgcatatgtataacaaagcataacaaattaaccaatgctgtatcatcgtgcctttctcccacagggaaaaaatatacatgaacttaggt |
514 |
Q |
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| T |
36397099 |
aattacatgattgcatatgtataacaaagcataacaaattaactaatgctgtatcatcgtgcctttctcccacagggaaaaaatatacatgaacttaggt |
36397000 |
T |
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| Q |
515 |
cctcaagac |
523 |
Q |
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| T |
36396999 |
cctcaagac |
36396991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 404 - 517
Target Start/End: Original strand, 8455143 - 8455256
Alignment:
| Q |
404 |
aaatccattataattacatgattgcatatgtataacaaagcataacaaattaaccaatgctgtatcatcgtgcctttctcccacagggaaaaaatataca |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8455143 |
aaatccattataattacatgattgcatatgtataacaaagcaaaacaaattaactaatgctgtatcatcgtgcctttcttccacagggaaaaaatataca |
8455242 |
T |
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| Q |
504 |
tgaacttaggtcct |
517 |
Q |
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| T |
8455243 |
tgaacttaggtcct |
8455256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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