View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8567_low_10 (Length: 247)
Name: NF8567_low_10
Description: NF8567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8567_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 32804655 - 32804516
Alignment:
| Q |
7 |
ttggtgttagacataactttaatctcacacgttcttgttagatagttggatacacattcattttttc-gtaatttttgttgatattaatctttagtctag |
105 |
Q |
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| T |
32804655 |
ttggtgttagacataactttaatctcatacgtccttgttagatagttggatacacatttattttttttgtaatttttgttgatattaatctttagtctag |
32804556 |
T |
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| Q |
106 |
aaaatttaattgtaaaatagttattgtaattttaacttat |
145 |
Q |
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| T |
32804555 |
aaaatttaattgtaaaatagttattgcaattttaacttat |
32804516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 32804446 - 32804400
Alignment:
| Q |
182 |
ttatggttggaagagtaaaaatggcaacgtggcaacaaacagataca |
228 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
32804446 |
ttatggttggaagagttaaaatgccaacgtggcaacaaacagataca |
32804400 |
T |
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