View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8567_low_12 (Length: 208)

Name: NF8567_low_12
Description: NF8567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8567_low_12
NF8567_low_12
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-194)||(2283-2476)
[»] chr7 (13 HSPs)
chr7 (1-194)||(13783698-13783891)
chr7 (21-194)||(21588197-21588370)
chr7 (22-142)||(33972932-33973052)
chr7 (22-160)||(32535065-32535203)
chr7 (21-155)||(21824224-21824358)
chr7 (22-167)||(5609583-5609728)
chr7 (13-148)||(7097512-7097647)
chr7 (21-138)||(665092-665209)
chr7 (30-139)||(5086451-5086560)
chr7 (22-154)||(27244138-27244270)
chr7 (16-109)||(15455647-15455740)
chr7 (24-188)||(19017080-19017244)
chr7 (16-148)||(29526670-29526802)
[»] chr5 (9 HSPs)
chr5 (10-194)||(13065517-13065701)
chr5 (1-194)||(8724537-8724730)
chr5 (24-153)||(19609243-19609372)
chr5 (21-139)||(11619273-11619391)
chr5 (37-167)||(20587500-20587630)
chr5 (21-167)||(20705963-20706109)
chr5 (34-148)||(36962067-36962181)
chr5 (34-148)||(42765139-42765253)
chr5 (24-187)||(31291564-31291727)
[»] chr3 (7 HSPs)
chr3 (1-194)||(15789870-15790063)
chr3 (22-154)||(2439338-2439470)
chr3 (22-154)||(34934937-34935069)
chr3 (21-167)||(14504193-14504339)
chr3 (24-148)||(8968479-8968603)
chr3 (24-136)||(9734555-9734667)
chr3 (27-150)||(2651898-2652021)
[»] chr2 (7 HSPs)
chr2 (24-194)||(31426299-31426469)
chr2 (21-154)||(21085084-21085217)
chr2 (22-139)||(34071466-34071582)
chr2 (24-169)||(20471026-20471171)
chr2 (34-148)||(27072222-27072336)
chr2 (16-111)||(7861445-7861540)
chr2 (24-106)||(18777126-18777208)
[»] chr8 (8 HSPs)
chr8 (22-154)||(28162043-28162175)
chr8 (22-154)||(25732426-25732558)
chr8 (1-165)||(12784170-12784333)
chr8 (21-160)||(7995032-7995171)
chr8 (24-193)||(3989372-3989541)
chr8 (14-160)||(25133013-25133158)
chr8 (13-103)||(12246926-12247016)
chr8 (58-136)||(11107851-11107929)
[»] chr4 (6 HSPs)
chr4 (1-148)||(20089150-20089297)
chr4 (27-150)||(15065758-15065881)
chr4 (30-130)||(25553105-25553205)
chr4 (16-148)||(47782833-47782965)
chr4 (24-153)||(17459250-17459379)
chr4 (16-52)||(13200690-13200726)
[»] chr1 (10 HSPs)
chr1 (24-151)||(27527140-27527267)
chr1 (24-194)||(4179821-4179991)
chr1 (30-151)||(25594915-25595036)
chr1 (27-151)||(38532795-38532919)
chr1 (42-194)||(11644617-11644769)
chr1 (21-151)||(29600855-29600985)
chr1 (22-160)||(21182485-21182624)
chr1 (16-109)||(26418919-26419012)
chr1 (16-109)||(32108268-32108361)
chr1 (24-160)||(22161601-22161737)
[»] scaffold0445 (1 HSPs)
scaffold0445 (22-148)||(14116-14242)
[»] chr6 (9 HSPs)
chr6 (22-160)||(10516002-10516140)
chr6 (24-164)||(21698560-21698700)
chr6 (22-154)||(11986063-11986195)
chr6 (24-194)||(30063712-30063882)
chr6 (28-193)||(7090468-7090633)
chr6 (16-109)||(15950642-15950735)
chr6 (15-188)||(23631427-23631600)
chr6 (16-113)||(13434195-13434292)
chr6 (24-71)||(15923719-15923766)
[»] scaffold0114 (1 HSPs)
scaffold0114 (22-147)||(11626-11751)
[»] scaffold1689 (1 HSPs)
scaffold1689 (22-167)||(761-906)
[»] scaffold0007 (1 HSPs)
scaffold0007 (27-154)||(234800-234927)
[»] scaffold0071 (1 HSPs)
scaffold0071 (16-148)||(52518-52650)
[»] scaffold0388 (1 HSPs)
scaffold0388 (33-167)||(14528-14661)


Alignment Details
Target: scaffold0251 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 2476 - 2283
Alignment:
Q  1 ttggagaggcgctgagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgatta 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  2476 ttggagaggcgctcggactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagttgactcgaaacgagtagcggatta 2377  T
Q  101 cttcaacaaaggccttggagatgtcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactctgatgtc 194  Q
     ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  2376 tttcaacaaaggcagtggagatgtcaccgaatttggttccataatggacagtagcatccatttctgtcggtcatttttaacaaactctcatgtc 2283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 13783698 - 13783891
Alignment:
Q  1 ttggagaggcgctgagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgatta 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  13783698 ttggagaggcgctgggactgtatcatgcaattcggtggatccatgaacttcaactcaaaaatgttgattttgaagttgactcgaaacgagtagcggatta 13783797  T
Q  101 cttcaacaaaggccttggagatgtcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactctgatgtc 194  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||    
T  13783798 tttcaacaaaggccgtggagatgtcaccgaatttggttccataatggacagtagcatccatttttgtcggtcatttttaacaaaatctcatgtc 13783891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 21588370 - 21588197
Alignment:
Q  21 tatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggag 120  Q
    |||||||||||||||||||| |||||||||||||| | ||  ||||||||||| || || ||||||  | |||||||||| |||||||||||    ||||    
T  21588370 tatcatgcaattcggtggattcatgaacttcaacttgcaatcgttgattttgaggttgattcgaaaataatagctgattatttcaacaaaggttgaggag 21588271  T
Q  121 atgtcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactctgatgtc 194  Q
    |||| ||||||||||||||||| ||||||||||| ||||| |||| |   || | ||||||||||||| |||||    
T  21588270 atgttaccgaatttggttccattatggacagtagtatccaattctatagttcctatttaacaaactctcatgtc 21588197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 33972932 - 33973052
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| |||| |||||| |||||||||||||||  |||||||||||| || || ||||| ||||||||||||||||| |||||||| || | ||||||    
T  33972932 atcatgcgattcagtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaacgagtagctgattatttcaacaatggtcgtggaga 33973031  T
Q  122 tgtcaccgaatttggttccat 142  Q
    ||||||||| |||||||||||    
T  33973032 tgtcaccgagtttggttccat 33973052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 32535203 - 32535065
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||||||||||||||| ||||||||||||||   ||||||||| || || ||  ||||  || ||||||||||||| ||||||||||| | ||||||    
T  32535203 atcatgcaattcggtggatacatgaacttcaacttacaaatgttgacttcgaggttaactcataaagagtagctgattatttcaacaaaggtcgtggaga 32535104  T
Q  122 tgtcaccgaatttggttccataatggacagtagcatcca 160  Q
    |||||||||||||||||| || ||||| | |||||||||    
T  32535103 tgtcaccgaatttggttctatcatggataatagcatcca 32535065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 21824224 - 21824358
Alignment:
Q  21 tatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggag 120  Q
    |||||||| || |||||||| |||||||||||||||  |||||||||||| || || ||||| ||| ||||||||||||| ||||||||||| | |||||    
T  21824224 tatcatgcgatccggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggtcgtggag 21824323  T
Q  121 atgtcaccgaatttggttccataatggacagtagc 155  Q
    |||||||||| || || || || ||||| ||||||    
T  21824324 atgtcaccgagttcggctctattatggatagtagc 21824358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 5609728 - 5609583
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    |||| |||| ||||||||| || ||||||||||||  |||||||||||| || || | ||| ||| ||||||||||||| ||||||||||| | ||||||    
T  5609728 atcacgcaactcggtggatacaagaacttcaactcacaaatgttgatttcgaggttggctctaaaagagtagctgattatttcaacaaaggtcgtggaga 5609629  T
Q  122 tgtcaccgaatttggttccataatggacagtagcatccatttctgt 167  Q
    |||||||||||||||||  || ||||| || || ||||| ||||||    
T  5609628 tgtcaccgaatttggttttattatggatagcagtatccacttctgt 5609583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 7097647 - 7097512
Alignment:
Q  13 tgagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaagg 112  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||  ||||||||||||||| || || ||||||  |||||||| ||| || ||||||||    
T  7097647 tgagactttatcatgcaattcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctggttattttaacaaagg 7097548  T
Q  113 ccttggagatgtcaccgaatttggttccataatgga 148  Q
    |   ||||||  |||||||||||| ||||| |||||    
T  7097547 cagaggagatagcaccgaatttggatccattatgga 7097512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 665209 - 665092
Alignment:
Q  21 tatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggag 120  Q
    ||||||||||||||||| || |||||||||||||| | ||| ||||||||||| || || || ||| ||||||||||||| ||||||||||| |  |||     
T  665209 tatcatgcaattcggtgaatacatgaacttcaacttgcaaacgttgattttgaggttgattcaaaaagagtagctgattatttcaacaaaggtcgaggac 665110  T
Q  121 atgtcaccgaatttggtt 138  Q
    |||||||| |||||||||    
T  665109 atgtcaccaaatttggtt 665092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 5086451 - 5086560
Alignment:
Q  30 attcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccg 129  Q
    ||||| |||||  |||||||||||||   |||||||||||||||||| ||||| ||| ||||||||||||| |||||||| |||  ||| ||||||||||    
T  5086451 attcgatggatatatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagctgattatttcaacaatggctgtggtgatgtcaccg 5086550  T
Q  130 aatttggttc 139  Q
    ||||||||||    
T  5086551 aatttggttc 5086560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 27244270 - 27244138
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| ||||| ||||| ||| |||||||||||  |||| ||||||| || || ||||| ||| |||||| |||||| |||||||| || | |||| |    
T  27244270 atcatgcgattcgatggatacataaacttcaactctcaaatattgatttcgaggttgactcaaaaagagtagttgattatttcaacaatggtcgtggaaa 27244171  T
Q  122 tgtcaccgaatttggttccataatggacagtag 154  Q
    ||||||||| ||||||||||| ||||| |||||    
T  27244170 tgtcaccgagtttggttccattatggatagtag 27244138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 15455647 - 15455740
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaa 109  Q
    |||| |||||||||| |||||||||| |||||||||| |||  ||||||||||||||| || || ||||||  |||||||||||| ||||||||    
T  15455647 gactttatcatgcaactcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaa 15455740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 19017244 - 19017080
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    |||||||||  |||||| ||||||||||||| |  | ||||||||||||| || |||||||||  |||||||||||| || || | ||     ||||||     
T  19017244 catgcaatttagtggatacatgaacttcaacccacagatgttgattttgaggttgactcgaaaaaagtagctgattattttaatagagagaagggagata 19017145  T
Q  124 tcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactct 188  Q
    ||||||| ||||||||||| ||||| | ||| || ||||||||| | |||| |||||||||||||    
T  19017144 tcaccgagtttggttccatcatggataatagtatacatttctgtaattcatatttaacaaactct 19017080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 29526670 - 29526802
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggcct 115  Q
    |||| |||||||||| |||||||||| |||||||||| |||  ||||||||||||||| || || ||||||  | |||||||||| ||||||||||        
T  29526670 gactttatcatgcaactcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacaatagctgattatttcaacaaagcaag 29526769  T
Q  116 tggagatgtcaccgaatttggttccataatgga 148  Q
     ||||||  |||||||||||| ||||| |||||    
T  29526770 aggagataacaccgaatttgggtccattatgga 29526802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 13065701 - 13065517
Alignment:
Q  10 cgctgagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaa 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  13065701 cgctgggactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagttgactcgaaacgagtagcggattatttcaacaa 13065602  T
Q  110 aggccttggagatgtcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactctgatgtc 194  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13065601 aggcagtggagatgtcaccgaatttggttccataatggacagtagcatccatttctgtcggtcatttttaacaaactctcatgtc 13065517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 8724537 - 8724730
Alignment:
Q  1 ttggagaggcgctgagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgatta 100  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  8724537 ttggagaggcgctggggttgtatcatgcaattcggtggatccatgaatttcaactcgaaaatgttgattttgaagttgactcgaaacgagtagcagatta 8724636  T
Q  101 cttcaacaaaggccttggagatgtcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactctgatgtc 194  Q
     ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||| |||||    
T  8724637 tttcaacaaaggtcgtggagatgtcaccgaatttggttctataatggacagtagcattcatttctgtcggtcacttttaacaaactctcatgtc 8724730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 19609372 - 19609243
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    ||||| ||||||||||| ||||||||||||||   |||||||||||||||||| ||||| ||| ||||||||||||| |||||||| || | ||||||||    
T  19609372 catgcgattcggtggattcatgaacttcaacttttaaatgttgattttgaagttgactcaaaaagagtagctgattatttcaacaatggtcgtggagatg 19609273  T
Q  124 tcaccgaatttggttccataatggacagta 153  Q
    |||| |||||||| || || ||||||||||    
T  19609272 tcactgaatttggctctattatggacagta 19609243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 11619391 - 11619273
Alignment:
Q  21 tatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggag 120  Q
    |||||||||||||||||||| || || ||||||||   ||||||||| || || || ||||| ||| ||||||| ||||| ||||||||||| | |||||    
T  11619391 tatcatgcaattcggtggatacaagagcttcaactttcaaatgttgacttcgaggttgactctaaaagagtagccgattatttcaacaaaggtcgtggag 11619292  T
Q  121 atgtcaccgaatttggttc 139  Q
    |||||||||||||||||||    
T  11619291 atgtcaccgaatttggttc 11619273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 20587500 - 20587630
Alignment:
Q  37 ggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccgaatttgg 136  Q
    ||||||||||||||||||||  |||||||||||| || || ||||| ||| ||||||||||||| |||||||| || | ||||||||||||||| || ||    
T  20587500 ggatccatgaacttcaactctcaaatgttgatttcgaggtagactctaaaagagtagctgattatttcaacaatggtcgtggagatgtcaccgagttcgg 20587599  T
Q  137 ttccataatggacagtagcatccatttctgt 167  Q
     || || ||||| |||||  |||| ||||||    
T  20587600 ctctatcatggatagtagtgtccaattctgt 20587630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 20705963 - 20706109
Alignment:
Q  21 tatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggag 120  Q
    ||||| || |||| |||||| |||||||||||||||  |||||||||||| || || ||||| ||| ||||||||| ||| |||||||| || | |||||    
T  20705963 tatcacgcgattcagtggatacatgaacttcaactctcaaatgttgatttcgaggtagactctaaaagagtagctggttatttcaacaatggtcgtggag 20706062  T
Q  121 atgtcaccgaatttggttccataatggacagtagcatccatttctgt 167  Q
    |||||||||| || || || || ||||| |||||  |||| ||||||    
T  20706063 atgtcaccgagttcggctctatcatggatagtagtgtccaattctgt 20706109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 36962181 - 36962067
Alignment:
Q  34 ggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccgaatt 133  Q
    ||||||| || ||||||||| |   |||||||||||| || || ||||| ||| ||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  36962181 ggtggatacaagaacttcaattaacaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggccatggagatatcaccgaatt 36962082  T
Q  134 tggttccataatgga 148  Q
     || ||||| |||||    
T  36962081 cggctccattatgga 36962067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 42765139 - 42765253
Alignment:
Q  34 ggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccgaatt 133  Q
    ||||||| || ||||||||| |   |||||||||||| || || ||||| ||| ||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  42765139 ggtggatacaagaacttcaattaacaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggccatggagatatcatcgaatt 42765238  T
Q  134 tggttccataatgga 148  Q
     || ||||| |||||    
T  42765239 cggctccattatgga 42765253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 31291564 - 31291727
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    |||||||||| |||||| ||||||||||| |||  ||||||||||||||| || || | ||||  ||||| |||||| || || | |||    ||||||     
T  31291564 catgcaattcagtggatacatgaacttcagctcacaaatgttgattttgaggttgaattgaaaaaagtagttgattattttaatagaggtaggggagata 31291663  T
Q  124 tcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactc 187  Q
    ||||||| ||||||||||| ||||| | ||| ||||| |||||| | || | ||||||||||||    
T  31291664 tcaccgagtttggttccatcatggataatagtatccaattctgtaattcctatttaacaaactc 31291727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15789870 - 15790063
Alignment:
Q  1 ttggagaggcgctgagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgatta 100  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  15789870 ttggagaggcgctggggctgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagttgactcgaaacgagtagcagatta 15789969  T
Q  101 cttcaacaaaggccttggagatgtcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactctgatgtc 194  Q
     ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||  ||| |||||||||||||| |||||    
T  15789970 tttcaacaaaggtcgtggagatgtcaccgaatttggttctataatggacagtagcattcatttctgtcgatcacttttaacaaactctcatgtc 15790063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 2439338 - 2439470
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| ||||||||||| |||||||||||||||  |||||||||||| || || ||||| ||| ||||||||||||| ||||||||||| | ||||||    
T  2439338 atcatgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtggaga 2439437  T
Q  122 tgtcaccgaatttggttccataatggacagtag 154  Q
    ||||||||| ||||| ||||| ||||| |||||    
T  2439438 tgtcaccgagtttggctccattatggatagtag 2439470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 34934937 - 34935069
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| ||||||||||| |||||||||||||||  |||||||||||| || || ||||  ||| ||||||||||||| |||||||| || | ||||||    
T  34934937 atcatgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactaaaaaagagtagctgattatttcaacaatggtcgtggaga 34935036  T
Q  122 tgtcaccgaatttggttccataatggacagtag 154  Q
    ||||||||| ||||| ||||| ||||| |||||    
T  34935037 tgtcaccgagtttggctccattatggatagtag 34935069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 14504339 - 14504193
Alignment:
Q  21 tatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggag 120  Q
    ||||||||| |||||||||| || ||||||||||||  |||||||||||| || || ||||  ||| || |||||||||| ||||||||||| | |||||    
T  14504339 tatcatgcacttcggtggatacaagaacttcaactcacaaatgttgatttcgaggttgactttaaaagaatagctgattatttcaacaaaggtcatggag 14504240  T
Q  121 atgtcaccgaatttggttccataatggacagtagcatccatttctgt 167  Q
    ||||||||||||||||||  || ||||| ||||  ||||| ||||||    
T  14504239 atgtcaccgaatttggttttattatggatagtaatatccacttctgt 14504193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 8968603 - 8968479
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    ||||| |||||||||||||||||||||||||||  |||||||||||| || || ||||| ||| |||||||||| || |||||||| |||| ||||||||    
T  8968603 catgcgattcggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaacggccgtggagatg 8968504  T
Q  124 tcaccgaatttggttccataatgga 148  Q
      ||||| || ||||| || |||||    
T  8968503 gtaccgagttcggttctatcatgga 8968479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 9734667 - 9734555
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    ||||| ||| |||||||||||||||||||||||  |||||||||||| || || ||||| ||| |||||||||| || |||||||| || | ||||||||    
T  9734667 catgcgattaggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaatggtcatggagatg 9734568  T
Q  124 tcaccgaatttgg 136  Q
    ||||||| |||||    
T  9734567 tcaccgagtttgg 9734555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 2652021 - 2651898
Alignment:
Q  27 gcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtca 126  Q
    |||||||||||||| || |||||||||||   || ||||||||||||||| ||||  ||| ||||||||||||| |||||||||||||  |||||||  |    
T  2652021 gcaattcggtggatacaagaacttcaacttacaattgttgattttgaagttgactataaaagagtagctgattatttcaacaaaggccgcggagatgcta 2651922  T
Q  127 ccgaatttggttccataatggaca 150  Q
    |||||||||| || || |||||||    
T  2651921 ccgaatttggctctattatggaca 2651898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 31426299 - 31426469
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    ||||| ||||||||||| ||||||||||||||   |||||||||||||||||| ||||| ||| ||||||||||||| |||||||| || | ||||||||    
T  31426299 catgcgattcggtggattcatgaacttcaacttttaaatgttgattttgaagtggactcaaaaagagtagctgattatttcaacaatggtcgtggagatg 31426398  T
Q  124 tcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatt-tttaacaaactctgatgtc 194  Q
    ||||||||||||| || || |||||||||||  |||| ||||| || | ||| ||||||||||||| |||||    
T  31426399 tcaccgaatttggctctattatggacagtagtgtccaattctg-caataattatttaacaaactctcatgtc 31426469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 21085217 - 21085084
Alignment:
Q  21 tatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggag 120  Q
    ||||| || |||||||||||||||||||||||||||  |||||||||||| || || ||||| ||| ||||||||||||| |||||||| || | |||||    
T  21085217 tatcacgcgattcggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaatggtcgtggag 21085118  T
Q  121 atgtcaccgaatttggttccataatggacagtag 154  Q
    |||||||||| || ||||| || ||||| |||||    
T  21085117 atgtcaccgagttcggttctattatggatagtag 21085084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 34071582 - 34071466
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||||||||||||||| |||||||||||||||   ||||||||||| || || ||||| ||| |||||||||||||||||||||| ||  | |||||    
T  34071582 atcatgcaattcggtggattcatgaacttcaactcactaatgttgatttcgaggttgactctaaaagagtagctgattacttcaacaatgg-ttgggaga 34071484  T
Q  122 tgtcaccgaatttggttc 139  Q
    ||||||||||||||||||    
T  34071483 tgtcaccgaatttggttc 34071466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 20471026 - 20471171
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    |||||| | |||||||| || |||||||||||    ||||||||||| || || ||||| ||| |||||||||| || ||||||||||||| |||||||     
T  20471026 catgcactacggtggatacaagaacttcaactaactaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaaaggccatggagata 20471125  T
Q  124 tcaccgaatttggttccataatggacagtagcatccatttctgtca 169  Q
    |||||||||| |||||||| ||||| | ||| ||||| || |||||    
T  20471126 tcaccgaattcggttccattatggataatagtatccaattgtgtca 20471171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 27072222 - 27072336
Alignment:
Q  34 ggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccgaatt 133  Q
    ||||||| || ||||||||| |   |||||||||||| || || ||||| ||| ||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  27072222 ggtggatacaagaacttcaaataacaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggccatggagatatcaccgaatt 27072321  T
Q  134 tggttccataatgga 148  Q
     || ||||| |||||    
T  27072322 cggctccattatgga 27072336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 7861445 - 7861540
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaag 111  Q
    |||| |||||||||| |||||||||| |||||||||| |||  ||||||||||||||| || || | ||||  | |||||||||| || |||||||    
T  7861445 gactttatcatgcaactcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagatttgaaaacaatagctgattattttaacaaag 7861540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 18777126 - 18777208
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaa 106  Q
    ||||||||||||||||||||||| ||| |  ||  |||||||||||| || || || ||||||  |||||||||||| |||||    
T  18777126 catgcaattcggtggatccatgaccttaagttcacaaatgttgatttcgaggttgattcgaaaaaagtagctgattatttcaa 18777208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 28162175 - 28162043
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| ||||||||||| |||||||||||||||  |||||||||||| || || ||||| ||| ||||||||||||| ||||||||||| | ||||||    
T  28162175 atcatgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtggaga 28162076  T
Q  122 tgtcaccgaatttggttccataatggacagtag 154  Q
    ||||||||| ||||| ||||| ||||| |||||    
T  28162075 tgtcaccgagtttggctccattatggatagtag 28162043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 25732558 - 25732426
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| ||||||||||| |||||||||||||||  |||||||||||| || || ||||| ||| ||||||||||||| ||||||||||| | ||||||    
T  25732558 atcatgcgattcggtggattcatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtggaga 25732459  T
Q  122 tgtcaccgaatttggttccataatggacagtag 154  Q
    | ||||||| ||||| ||||| ||||| |||||    
T  25732458 tatcaccgagtttggctccattatggatagtag 25732426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 12784333 - 12784170
Alignment:
Q  1 ttggagaggcgctgagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgatta 100  Q
    |||||||||| ||| | || |||||||||||||| ||||| ||| || |||| |||| |||||||| |||||| || || |||||| |||||||||||||    
T  12784333 ttggagaggccctgggtctatatcatgcaattcgatggatacataaatttcagctcgtaaatgttgcttttgaggttgattcgaaaagagtagctgatta 12784234  T
Q  101 cttcaacaaaggccttggagatgtcaccgaatttggttccataatggacagtagcatccatttct 165  Q
     || |||||||| |  ||||||||||||||||| |||||||| ||||| ||||| ||||| ||||    
T  12784233 -tttaacaaaggtcgaggagatgtcaccgaattgggttccattatggatagtagtatccaattct 12784170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 7995032 - 7995171
Alignment:
Q  21 tatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggag 120  Q
    |||||| |||||||||||||  ||||||||||||| | ||| ||||||||| | || || |||||| ||||||||||||| ||||||||||  |  ||||    
T  7995032 tatcatccaattcggtggataaatgaacttcaacttgcaaacgttgatttttaggttgattcgaaaagagtagctgattatttcaacaaagatcgaggag 7995131  T
Q  121 atgtcaccgaatttggttccataatggacagtagcatcca 160  Q
    |||||| ||||||||||||||| ||||| ||||| |||||    
T  7995132 atgtcatcgaatttggttccattatggatagtagtatcca 7995171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 3989372 - 3989541
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    ||||||||||||||||| ||| |||||||||||  |||||||||||||||  | || ||||||  |||||||||||| || || ||| | | |||||||     
T  3989372 catgcaattcggtggatacataaacttcaactcataaatgttgattttgagattgattcgaaaatagtagctgattattttaataaaagtcgtggagata 3989471  T
Q  124 tcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactctgatgt 193  Q
    ||||| | ||| ||||||| ||||| ||||| ||||| || ||| | || | ||||||||||||| ||||    
T  3989472 tcaccaagtttcgttccattatggatagtagtatccaattatgtaattcctatttaacaaactctcatgt 3989541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 25133013 - 25133158
Alignment:
Q  14 gagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggc 113  Q
    |||| |||| ||||||||| ||||||||||||||| | |||||  |||||||| ||||||||| || ||||||  ||||||| |||| || ||||||||     
T  25133013 gagattgtaccatgcaatttggtggatccatgaacat-aactcataaatgttggttttgaagttgattcgaaaatagtagctcattattttaacaaaggt 25133111  T
Q  114 cttggagatgtcaccgaatttggttccataatggacagtagcatcca 160  Q
       ||||||||||  || ||||||||||| ||||| ||||| |||||    
T  25133112 aggggagatgtcagagagtttggttccattatggatagtagtatcca 25133158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 12246926 - 12247016
Alignment:
Q  13 tgagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattactt 103  Q
    ||||||| || ||||||||||||||||| ||||||||||| |||  |||||||||||||||  | || || ||| |||||| |||||||||    
T  12246926 tgagactttaccatgcaattcggtggattcatgaacttcagctcacaaatgttgattttgagattgattcaaaaagagtagttgattactt 12247016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 11107929 - 11107851
Alignment:
Q  58 aaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccgaatttgg 136  Q
    |||||||||||||||| || || ||||| || |||||||| || |||||| |||||  ||| |||||||| ||||||||    
T  11107929 aaaatgttgattttgaggtagattcgaagcgcgtagctgactatttcaaccaaggcaatggtgatgtcacagaatttgg 11107851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 20089297 - 20089150
Alignment:
Q  1 ttggagaggcgctgagactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgatta 100  Q
    |||||||||| ||| | || |||||||||||||||||||| |||||||||||||| | ||||||||||||||| || ||||| ||| ||||| |||| ||    
T  20089297 ttggagaggccctgtgtctttatcatgcaattcggtggattcatgaacttcaacttgcaaatgttgattttgaggttgactcaaaaagagtaactgacta 20089198  T
Q  101 cttcaacaaaggccttggagatgtcaccgaatttggttccataatgga 148  Q
     ||||||||||  |  |||||||||||||||||||| ||||| |||||    
T  20089197 tttcaacaaagatcgaggagatgtcaccgaatttgggtccattatgga 20089150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 15065758 - 15065881
Alignment:
Q  27 gcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtca 126  Q
    |||||||||||||| |  |||||||||||   |||||||||||||||||| ||||| ||| |||||| |||||| ||||||||||||| ||||||||  |    
T  15065758 gcaattcggtggatacgagaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagttgattatttcaacaaaggccgtggagatgcta 15065857  T
Q  127 ccgaatttggttccataatggaca 150  Q
    ||||||||||||| || |||||||    
T  15065858 ccgaatttggttctattatggaca 15065881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 25553105 - 25553205
Alignment:
Q  30 attcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccg 129  Q
    |||||||||||||||||||||||||||  |||||||||||| || || ||||| ||| |||||||||| || |||||||| |||| ||||||||| ||||    
T  25553105 attcggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaatggccgtggagatgttaccg 25553204  T
Q  130 a 130  Q
    |    
T  25553205 a 25553205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 47782833 - 47782965
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggcct 115  Q
    |||| ||||||||||||||||||||| |||||||| |||||  ||||||||||||||| || || ||||||  |||||||||||| ||||||||||        
T  47782833 gactttatcatgcaattcggtggatcaatgaactttaactcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaaagcaag 47782932  T
Q  116 tggagatgtcaccgaatttggttccataatgga 148  Q
     ||||||  |||||||||||| ||||| |||||    
T  47782933 aggagataacaccgaatttggatccattatgga 47782965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 17459250 - 17459379
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    |||||| |||||||||| || ||||||||| |   |||||||||||| || || ||||| ||| |||||| |||||| ||||||||||| | |||||||     
T  17459250 catgcacttcggtggatacaagaacttcaattaacaaatgttgatttcgaggttgactctaaaagagtagttgattatttcaacaaaggtcatggagata 17459349  T
Q  124 tcaccgaatttggttccataatggacagta 153  Q
    |||||||||||||||| || ||||| ||||    
T  17459350 tcaccgaatttggttctattatggatagta 17459379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 13200690 - 13200726
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttca 52  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  13200690 gactttatcatgcaattcggtggatcaatgaacttca 13200726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 27527140 - 27527267
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    ||||||||||||||||| || |||||||||||   |||||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||||| |||||||     
T  27527140 catgcaattcggtggatacaagaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagctgattatttctacaaaggccgtggagata 27527239  T
Q  124 tcaccgaatttggttccataatggacag 151  Q
      |||||||||||||| || ||||||||    
T  27527240 ctaccgaatttggttctattatggacag 27527267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 4179821 - 4179991
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    ||||| ||||||||||| ||||||||||||||   |||||||||||||||||| ||||  ||| ||||||||||||| |||||||| || | ||||||||    
T  4179821 catgcgattcggtggattcatgaacttcaacttttaaatgttgattttgaagttgactaaaaaagagtagctgattatttcaacaatggtcgtggagatg 4179920  T
Q  124 tcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatt-tttaacaaactctgatgtc 194  Q
    |||| |||||||| || || ||| |||||||  |||| ||||| || | ||| ||||||||||||| |||||    
T  4179921 tcactgaatttggctctattatgaacagtagtgtccaattctg-caataattatttaacaaactctcatgtc 4179991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 25595036 - 25594915
Alignment:
Q  30 attcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccg 129  Q
    |||||||||||  |||||||||||||   |||||||||||||||||| ||||| ||| ||| ||||||||| |||||||| || | ||| ||| ||||||    
T  25595036 attcggtggatatatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagcagctgattatttcaacaatggtcgtggtgatatcaccg 25594937  T
Q  130 aatttggttccataatggacag 151  Q
    |||||||||| |||||||||||    
T  25594936 aatttggttctataatggacag 25594915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 38532919 - 38532795
Alignment:
Q  27 gcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtca 126  Q
    |||||||||||||| || |||||||||||   |||||||||||||||||| ||||| ||  ||||||||||||| ||||||||||| | ||||||||  |    
T  38532919 gcaattcggtggatacaagaacttcaacttacaaatgttgattttgaagttgactctaacagagtagctgattatttcaacaaaggtcgtggagatgcta 38532820  T
Q  127 ccgaatttggttccataatggacag 151  Q
    |||||||||| || || ||||||||    
T  38532819 ccgaatttggctctattatggacag 38532795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 11644617 - 11644769
Alignment:
Q  42 catgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccgaatttggttcca 141  Q
    |||||||||||||||  ||||||||  ||  | || ||||| ||| ||||||||||||| ||||||||||| | || ||||||||| || |||||||| |    
T  11644617 catgaacttcaactcacaaatgttgtgttcaaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtgaagatgtcactgactttggttcta 11644716  T
Q  142 taatggacagtagcatccatttctgtcagtcatttttaacaaactctgatgtc 194  Q
    | ||| |||||||||||||||||||| |  | | ||||||||||||| |||||    
T  11644717 ttatgcacagtagcatccatttctgtaacacttatttaacaaactctcatgtc 11644769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 29600855 - 29600985
Alignment:
Q  21 tatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggag 120  Q
    ||||| || ||||||||||| |||||||||||||||  |||||||||||| || || ||||| ||| || |||||||||| |||||||| || | |||||    
T  29600855 tatcacgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggtagactctaaaagaatagctgattatttcaacaatggtcgtggag 29600954  T
Q  121 atgtcaccgaatttggttccataatggacag 151  Q
    |||||||||| || || || || ||||||||    
T  29600955 atgtcaccgagttcggctctatcatggacag 29600985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 21182485 - 21182624
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagt-agctgattacttcaacaaaggccttggag 120  Q
    ||||||||||||| ||||| ||||||||||||||   ||||||||| ||  | || ||||| ||| |||| ||| ||||| |||||||||||   |||||    
T  21182485 atcatgcaattcgctggatacatgaacttcaactttcaaatgttgacttcaaggttgactcaaaaagagttagccgattatttcaacaaaggttgtggag 21182584  T
Q  121 atgtcaccgaatttggttccataatggacagtagcatcca 160  Q
    ||||||| ||||||||||| || ||||| |||||||||||    
T  21182585 atgtcactgaatttggttctattatggatagtagcatcca 21182624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 26419012 - 26418919
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaa 109  Q
    |||| |||||||||| |||||||||| |||||||||| |||  ||||||||||||||| || || ||||||  |||||||||||| ||||||||    
T  26419012 gactttatcatgcaactcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaa 26418919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 32108268 - 32108361
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaa 109  Q
    |||| |||||||||| |||||||||| |||||||||| |||  ||||||||||||||| || || ||||||  |||||||||||| ||||||||    
T  32108268 gactttatcatgcaactcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaa 32108361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 22161601 - 22161737
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    |||||| | |||||||| || ||||||||| |   |||||||||||| ||  | ||||| ||| ||||||||||||| ||||||||||| | |||||||     
T  22161601 catgcactacggtggatacaagaacttcaattaacaaatgttgatttcgagattgactctaaaagagtagctgattatttcaacaaaggtcatggagata 22161700  T
Q  124 tcaccgaatttggttccataatggacagtagcatcca 160  Q
    ||||| |||||||||| || ||||| ||||| |||||    
T  22161701 tcaccaaatttggttctattatggatagtagtatcca 22161737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 14242 - 14116
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| |||| |||||| |||||||||||||||  |||||||||||| || || ||||| ||| ||||||||||||| ||||||||||| | ||||||    
T  14242 atcatgcgattcagtggattcatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtggaga 14143  T
Q  122 tgtcaccgaatttggttccataatgga 148  Q
    ||||||||| ||||| ||||| |||||    
T  14142 tgtcaccgagtttggatccattatgga 14116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 10516002 - 10516140
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||||||||||||||| |||||||||||||||  |||||||||||| || || | ||| ||| | ||||||||||| ||||||||||| | ||||||    
T  10516002 atcatgcaattcggtggatacatgaacttcaactcataaatgttgatttcgaggttgtctcaaaaagtgtagctgattatttcaacaaaggtcgtggaga 10516101  T
Q  122 tgtcaccgaatttggttccataatggacagtagcatcca 160  Q
    ||||||| | |||||||  || ||||| |||||||||||    
T  10516102 tgtcaccaagtttggttgtattatggatagtagcatcca 10516140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 21698560 - 21698700
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    ||||| ||||||||||| || ||| |||||||   |||||||||||||||||| ||||  ||| ||||||||||||| |||||||| || | ||||||||    
T  21698560 catgcgattcggtggattcaagaaattcaacttttaaatgttgattttgaagttgactaaaaaagagtagctgattatttcaacaatggtcgtggagatg 21698659  T
Q  124 tcaccgaatttggttccataatggacagtagcatccatttc 164  Q
    ||||||||||||| || || |||||||||||  ||||||||    
T  21698660 tcaccgaatttggctctattatggacagtagtgtccatttc 21698700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 11986063 - 11986195
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| ||||||||||| |||||||||||||||  |||||||||||| ||  | ||||| ||| |||||||| |||| |||||||| || | |||| |    
T  11986063 atcatgcgattcggtggattcatgaacttcaactcttaaatgttgatttcgagattgactcaaaaagagtagctaattatttcaacaatggtcgtggaaa 11986162  T
Q  122 tgtcaccgaatttggttccataatggacagtag 154  Q
    ||||||||| ||||||||||| ||||| |||||    
T  11986163 tgtcaccgagtttggttccattatggatagtag 11986195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 30063882 - 30063712
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatg 123  Q
    ||||| ||||||||||| ||||||||||||||   |||||||||||||||| | ||||  |||  |||||||||||| |||||||| || |  |||||||    
T  30063882 catgcgattcggtggattcatgaacttcaacttttaaatgttgattttgaaatggactaaaaaatagtagctgattatttcaacaatggtcgcggagatg 30063783  T
Q  124 tcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatt-tttaacaaactctgatgtc 194  Q
    ||||| ||||||| || || |||||||||||  |||| ||||| || | ||| ||||||||||||| |||||    
T  30063782 tcaccaaatttggatctatcatggacagtagtgtccaattctg-caataattatttaacaaactctcatgtc 30063712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 7090633 - 7090468
Alignment:
Q  28 caattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcac 127  Q
    ||||| ||||||| ||||||||||  |||  ||||||||||||||| || || |  |||  |||||||||||  || ||||||||||| |||||| ||||    
T  7090633 caatttggtggattcatgaacttcggctcacaaatgttgattttgaggttgattaaaaaatagtagctgattcttttaacaaaggcctgggagatatcac 7090534  T
Q  128 cgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactctgatgt 193  Q
    ||| ||||||||||| ||||| | ||| ||||| ||| || | |||| ||||||||||||| ||||    
T  7090533 cgagtttggttccattatggatactagtatccaattcagtaaatcatatttaacaaactctcatgt 7090468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 15950642 - 15950735
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaa 109  Q
    |||| |||||||||| |||||||||| |||||||||| |||  ||||||||||||||| || || ||||||  |||||||||||| ||||||||    
T  15950642 gactttatcatgcaactcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaa 15950735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 23631427 - 23631600
Alignment:
Q  15 agactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggcc 114  Q
    ||||| |||| ||||||| |||||||| ||||||||||||||  |||||| |||||||| || || ||||||  ||||| |||||| || |||||||||     
T  23631427 agactttatcgtgcaatttggtggatcaatgaacttcaactcacaaatgtcgattttgaggtagattcgaaaacagtagttgattattttaacaaaggca 23631526  T
Q  115 ttggagatgtcaccgaatttggttccataatggacagtagcatccatttctgtcagtcatttttaacaaactct 188  Q
      | ||||  |||||||||||| ||||| ||||| | ||  |||||||| ||| |   ||||||||||||||||    
T  23631527 gcgaagatagcaccgaatttggatccattatggataataatatccatttttgtaatatatttttaacaaactct 23631600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 13434195 - 13434292
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggc 113  Q
    |||| ||||||| |||||||||| || |||||||||| |||  |||||||||||||||  | || ||||||  ||||| |||||| || |||||||||    
T  13434195 gactttatcatgtaattcggtggttcaatgaacttcagctcacaaatgttgattttgagatagattcgaaaacagtagttgattattttaacaaaggc 13434292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 15923766 - 15923719
Alignment:
Q  24 catgcaattcggtggatccatgaacttcaactcgaaaatgttgatttt 71  Q
    ||||||||| ||||||| |||||||||||||||  |||||||||||||    
T  15923766 catgcaatttggtggatacatgaacttcaactcacaaatgttgatttt 15923719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 11751 - 11626
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| ||||||||||| |||||||||||||||  |||||||||||| || || ||||| ||| ||||||||||||| |||||||||||   ||||||    
T  11751 atcatgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtagtggaga 11652  T
Q  122 tgtcaccgaatttggttccataatgg 147  Q
    ||||||||| ||||| ||||| ||||    
T  11651 tgtcaccgagtttggctccattatgg 11626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 761 - 906
Alignment:
Q  22 atcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggaga 121  Q
    ||||||| ||||||||||  |||||||||||||||  ||||||| |||| || || || || ||| |||||||| |||| ||||||||||| | ||||||    
T  761 atcatgcgattcggtggactcatgaacttcaactctcaaatgttaatttcgaggttgattcaaaaagagtagctaattatttcaacaaaggtcgtggaga 860  T
Q  122 tgtcaccgaatttggttccataatggacagtagcatccatttctgt 167  Q
    ||||||||| ||||||||||| ||||| | |||| || ||||||||    
T  861 tgtcaccgagtttggttccattatggataatagcttcaatttctgt 906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 234927 - 234800
Alignment:
Q  27 gcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtca 126  Q
    |||||||||||||| || ||||||||||    |||||||||||||||||| ||||| ||| ||||||||||||| || ||||||||    |||||||  |    
T  234927 gcaattcggtggatacaagaacttcaacctacaaatgttgattttgaagttgactctaaaagagtagctgattatttgaacaaaggttgcggagatgcta 234828  T
Q  127 ccgaatttggttccataatggacagtag 154  Q
    |||||||||| || || |||||||||||    
T  234827 ccgaatttggctctattatggacagtag 234800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 52518 - 52650
Alignment:
Q  16 gactgtatcatgcaattcggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggcct 115  Q
    |||| |||||||||| | |||||||| |||||||||| |||  ||||||||||||||| || || ||||||  |||||||||||| ||  |||||| |      
T  52518 gactttatcatgcaacttggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattattttcacaaagccag 52617  T
Q  116 tggagatgtcaccgaatttggttccataatgga 148  Q
     ||||||  |||||||||||| ||||| |||||    
T  52618 aggagataacaccgaatttggatccattatgga 52650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 14661 - 14528
Alignment:
Q  33 cggtggatccatgaacttcaactcgaaaatgttgattttgaagtcgactcgaaacgagtagctgattacttcaacaaaggccttggagatgtcaccgaat 132  Q
    |||||||| |||||||||||| |   |||||||||||| || || ||||| |||  ||| ||| |||| ||||||||||| | |||||||||| ||||||    
T  14661 cggtggatacatgaacttcaatttacaaatgttgatttcgaggttgactcaaaaatagttgctaattatttcaacaaaggtcgtggagatgtc-ccgaat 14563  T
Q  133 ttggttccataatggacagtagcatccatttctgt 167  Q
    ||||||  || || || | ||||||||||||||||    
T  14562 ttggttttatcattgataatagcatccatttctgt 14528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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