View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8567_low_3 (Length: 357)
Name: NF8567_low_3
Description: NF8567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8567_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 32804251 - 32803910
Alignment:
| Q |
1 |
attctcctccgctcttcctcgccaaaccattttcgaagccgccgacattctctactattcaggcttcgactctatgtccctaactctcgaaatcgccgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32804251 |
attctcctccgctcttcctcgccaaaccattttcgaagccgccgacattctctactattcaggcttcgactctatgtccctaactctcgaactcgccgaa |
32804152 |
T |
|
| Q |
101 |
agtcttcttgaacactcaccttccaccaccatcttcgctccctccgattcagcgttcaagaaatctggtcaaccatcactcgatcttcttctctttcact |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32804151 |
agtcttcttgaacactcaccttccgccaccatcttcgctccctccgattcagcgttcaagaaatctggtcaaccatcactcgatcttcttctctttcact |
32804052 |
T |
|
| Q |
201 |
tcgtcatgttaccgctcccgcagcaaagcctccggcgtcttcccgctggcactaagcttccaacgatgctcaccggtcagtctctaaccgtcactacctc |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32804051 |
tcgtcatcttaccgctcccgcagcaaagcctccggcgtcttcccgctggcactaagcttccaacgatgctcaccggtcagtcgctaaccgtcactacctc |
32803952 |
T |
|
| Q |
301 |
ttcctccgatcgcgtgacatctgttaacaatatcaaaatcat |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
32803951 |
ttcctccgatcgcgtgacatctgttaacaatatcaaaatcat |
32803910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 49029060 - 49028725
Alignment:
| Q |
9 |
ccgctcttcctcgccaaaccattttcgaagccgccgacattctctactattcaggcttcgactctatgtccctaactctcgaaatcg---ccgaaagtct |
105 |
Q |
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|||||||||||||| ||||||||||||| ||||| ||||||||| | |||||||||||| ||| |||||||||||||||||||||| ||||| ||| |
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| T |
49029060 |
ccgctcttcctcgcgaaaccattttcgacgccgcagacattctcctcgattcaggcttcgtctccatgtccctaactctcgaaatcgtcgccgaatctct |
49028961 |
T |
|
| Q |
106 |
tcttgaacactcaccttccaccaccatcttcgctccctccgattcagcgttcaagaaatctggtcaaccatcactcgatcttcttctctttcacttcgtc |
205 |
Q |
| |
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||| ||||| |||| ||| ||||| |||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||| || ||||||||| |
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| T |
49028960 |
tctggaacagtcacactccgccaccgtctttgctccctccgattccgcgttcaagaaatccggtcaaccttcactcgatcttcttcgtttccacttcgtc |
49028861 |
T |
|
| Q |
206 |
atgttaccgctcccgcagcaaagcctccggcgtcttcccgctggcactaagcttccaacgatgctcaccggtcagtctctaaccgtcactacctcttcct |
305 |
Q |
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||||||||||| |||||||||||| | || ||||||||||| ||| |||||||||| |||||||| ||||||||||| |||||||||||||| || | || |
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| T |
49028860 |
atgttaccgcttccgcagcaaagcttacgccgtcttcccgccggcgctaagcttccgacgatgcttaccggtcagtcgctaaccgtcactacatcattct |
49028761 |
T |
|
| Q |
306 |
ccgatcgcgtgacatctgttaacaatatcaaaatca |
341 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||| |
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| T |
49028760 |
ccgatcgcgtgacctctgttaacaatatcaagatca |
49028725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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