View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8568_high_1 (Length: 501)
Name: NF8568_high_1
Description: NF8568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8568_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 37147501 - 37147161
Alignment:
| Q |
1 |
actaacttgaactaacttaaaccataggattattacatcagtaactaactttctagtttacttgctatgcaagtcatcactatcttccttggccgttgct |
100 |
Q |
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| T |
37147501 |
actaacatgaactaacttaaaccataggattattacatcagtaactaactttctagtttacttgctatgcaagtcatcactatcttccttggcccttgct |
37147402 |
T |
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| Q |
101 |
tctatctctattatttgcgtgatgcaatatccccacaagttggtggttgataaatgttgatcatccccaacttcttgacggctgaagctggactttgtcg |
200 |
Q |
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| T |
37147401 |
tctatctctattatttgcgtgatgcaatatccccacaagttggtggttgataaatgttgatcatccccaacttcttgacggctgaagctggactttgtcg |
37147302 |
T |
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| Q |
201 |
ttcacatgtctttcaatggtgggttttaaccggcgacaaatctgttggttttaaggtagt-nnnnnnnnnntcaggatttttgttaagaactggataggt |
299 |
Q |
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| T |
37147301 |
ttcacatgtctttcaatggtgggttttaaccggcgacaaatctgttggttttaaggtagtaaaaaaaaaaatcaggatttttgttaagaactgaataggt |
37147202 |
T |
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| Q |
300 |
tctttgatggttaaagctccaggatccggtgaatgttacat |
340 |
Q |
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| T |
37147201 |
tctttgatggttaaagctccaggatccggtgaatgttacat |
37147161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 343 - 489
Target Start/End: Complemental strand, 37147131 - 37146986
Alignment:
| Q |
343 |
ttgagtagttacgagttgggtttctcatttgtggtcaatgtttctgacttgtgattctattattcctttttagagttgttaagcacatcaagtttcaaag |
442 |
Q |
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| T |
37147131 |
ttgagtagttacgagttgggtttctcattcgtggtcaatgtttctgacttgtgattctcttattcctttttagagttgttaagcacatcaagtttcaaag |
37147032 |
T |
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| Q |
443 |
tttgttttgtcgacgccgcaccggtcccgctgtaacttgtgatatct |
489 |
Q |
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| T |
37147031 |
tttgttttgtcgacgccgcaccggt-ccgctgtaacttgtgatatct |
37146986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 452
Target Start/End: Complemental strand, 32040 - 31961
Alignment:
| Q |
373 |
gtggtcaatgtttctgacttgtgattctattattcctttttagagttgttaagcacatcaagtttcaaagtttgttttgt |
452 |
Q |
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|||||| |||| | |||||| ||||||| | ||||||||||||||||||| |||| | ||||||| |||||||||||| |
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| T |
32040 |
gtggtcgatgtgtttgacttttgattctttgattcctttttagagttgttgagcattgctagtttcatagtttgttttgt |
31961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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