View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8568_low_1 (Length: 754)

Name: NF8568_low_1
Description: NF8568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8568_low_1
NF8568_low_1
[»] chr4 (1 HSPs)
chr4 (18-741)||(44904321-44905051)
[»] chr7 (9 HSPs)
chr7 (96-192)||(26192388-26192484)
chr7 (18-142)||(26121383-26121508)
chr7 (18-70)||(26129638-26129690)
chr7 (261-332)||(26180610-26180681)
chr7 (18-70)||(19102574-19102626)
chr7 (20-70)||(26180153-26180203)
chr7 (191-240)||(26121552-26121601)
chr7 (191-240)||(26129805-26129854)
chr7 (404-457)||(26192735-26192788)
[»] chr8 (1 HSPs)
chr8 (153-225)||(4754373-4754444)


Alignment Details
Target: chr4 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 18 - 741
Target Start/End: Original strand, 44904321 - 44905051
Alignment:
Q  18 tgaagaaatccaaagcacttggtgagaaagcagattagataactgaaatgaagatgtaatcttgttgcattaagaggtgtagctggtgaaggctttagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44904321 tgaagaaatccaaagcacttggtgagaaagcagattagataactgaaatgaagatgtaatcttgttgcattaagaggtgtagctggtgaaggctttagat 44904420  T
Q  118 atgataaaacaatatccaactttttctctccggctattttttgctgtgatttggagttcaataagatgaaacaatccaatcattcatctgcactgcaatg 217  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44904421 atgataaaacaatatccaactttttctctccggttatttttttctgtgatttggagttcaataagatgaaacaatccaatcattcatctgcactgcaatg 44904520  T
Q  218 atgataaaggaagttagtttttaccaagcaattttcataccaagctaagaaaaagatctgttgatgaattaaattccgttgtctactttggtatgcttta 317  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44904521 atgataaaggaagttagtttttactaagcaattttcataccaagctaagaaaaagatctgttgatgaattaaattccgttgtctactttggtatgcttta 44904620  T
Q  318 caatatttatcattggtcatatgaattcattactacatatattttatatgccatcacagcatggactataaaaagattctctgaataaacatggaacgaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44904621 caatatttatcattggtcatatgaattcattactacatatattttatatgccatcacagcatggactataaaaagattctctgaataaacatggaacaaa 44904720  T
Q  418 gagctgtactatatagaagctgcaatcaatttaaagaaacattccaacatatgaaagtaactcatattatcatatgcgaaagc-------tgctttgtta 510  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||    
T  44904721 gcgctgtactatatagaagctgcaatcaatttaaagaaacattccaacatatgaaagtaactcatattatcatatgcgaaggctttcatatgctttgtta 44904820  T
Q  511 gaaattccgccttaatctcaatctgcccctatttgtgatgccttcattgcggtctattgtaccttcatcgtgtttataaaaaatggctcaccactcagct 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44904821 gaaattccgccttaatctcaatctgcccctatttgtgatgccttcattgcggtctcttgtaccttcatcgtgtttataaaaaatggctcaccactcagct 44904920  T
Q  611 tgcatctgatgcaaaagtggctgtgaagtgtgaagtgcttaaatggtaaatgtgacctagcaaccattggtccaatacttctagattgtttaagttagag 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44904921 tgcatctgatgcaaaagtggctgtgaagtgtgaagtgcttaaatggtaaatgtgacctagcaaccattggtccaatacttctagattgtttaagttagag 44905020  T
Q  711 taaatgctgatatcaaatgaaactgatgtcc 741  Q
    |||||||||||||||||||||||||||||||    
T  44905021 taaatgctgatatcaaatgaaactgatgtcc 44905051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 26192388 - 26192484
Alignment:
Q  96 gtagctggtgaaggctttagatatgataaaacaatatccaactttttctctccggctattttttgctgtgatttggagttcaataagatgaaacaat 192  Q
    ||||||| | ||||||||  ||||||| |||||| |||||| ||||||||||| |||| |||||||||| || ||||||||||||||||||| ||||    
T  26192388 gtagctgattaaggctttgaatatgatgaaacaacatccaagtttttctctccagctactttttgctgttatctggagttcaataagatgaatcaat 26192484  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 26121383 - 26121508
Alignment:
Q  18 tgaagaaatccaaagcacttggtgagaaagcagattagataactgaaatgaagatgtaat-cttgttgcattaagaggtgtagctggtgaaggctttaga 116  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||||||||  |||||  ||| ||| | | |||||||| ||| ||||||||||  |    
T  26121383 tgaagaaatctaaagcacttggtgagaaagcagattagataagtcaaatgaaggagtaatgtttgatgcttcaggaggtgtatctgatgaaggctttcaa 26121482  T
Q  117 tatgataaaacaatatccaacttttt 142  Q
    || ||| ||| || |||||| |||||    
T  26121483 taagatgaaagaacatccaatttttt 26121508  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 26129638 - 26129690
Alignment:
Q  18 tgaagaaatccaaagcacttggtgagaaagcagattagataactgaaatgaag 70  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  26129638 tgaagaaatctaaagcacttggtgagaaagcagattagataagtcaaatgaag 26129690  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 26180610 - 26180681
Alignment:
Q  261 gctaagaaaaagatctgttgatgaattaaattccgttgtctactttggtatgctttacaatatttatcattg 332  Q
    |||||| ||||||| || ||||||||||| ||  ||||||||||||||| | ||||| ||||||||||||||    
T  26180610 gctaaggaaaagatgtgatgatgaattaagttttgttgtctactttggttttctttataatatttatcattg 26180681  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 19102626 - 19102574
Alignment:
Q  18 tgaagaaatccaaagcacttggtgagaaagcagattagataactgaaatgaag 70  Q
    |||||||||| ||  ||||||||||||||||||||||||||| | ||||||||    
T  19102626 tgaagaaatctaagtcacttggtgagaaagcagattagataattcaaatgaag 19102574  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 26180153 - 26180203
Alignment:
Q  20 aagaaatccaaagcacttggtgagaaagcagattagataactgaaatgaag 70  Q
    |||||||| || |||||||||| ||||||||||||||||| | ||||||||    
T  26180153 aagaaatctaaggcacttggtgtgaaagcagattagataagtcaaatgaag 26180203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 26121552 - 26121601
Alignment:
Q  191 atccaatcattcatctgcactgcaatgatgataaaggaagttagttttta 240  Q
    |||||||||||| | |||  |||||||||||||||||| |||||||||||    
T  26121552 atccaatcattcttgtgccttgcaatgatgataaaggacgttagttttta 26121601  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 26129805 - 26129854
Alignment:
Q  191 atccaatcattcatctgcactgcaatgatgataaaggaagttagttttta 240  Q
    |||||||||||  | |||| |||||||||||||||||| |||||||||||    
T  26129805 atccaatcatttttgtgcattgcaatgatgataaaggacgttagttttta 26129854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 457
Target Start/End: Original strand, 26192735 - 26192788
Alignment:
Q  404 aaacatggaacgaagagctgtactatatagaagctgcaatcaatttaaagaaac 457  Q
    ||||| ||||| |||||  ||||||||||||||||| ||||||||| |||||||    
T  26192735 aaacaaggaactaagagtggtactatatagaagctgtaatcaattttaagaaac 26192788  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 4754373 - 4754444
Alignment:
Q  153 attttttgctgtgatttggagttcaataagatgaaacaatccaatcattcatctgcactgcaatgatgataaa 225  Q
    |||||| || ||||||||||||||||||||||| ||| |||||||||||| | |||| || ||| ||||||||    
T  4754373 atttttcgcagtgatttggagttcaataagatgcaac-atccaatcattcttgtgcattgtaattatgataaa 4754444  T

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