View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8568_low_14 (Length: 216)
Name: NF8568_low_14
Description: NF8568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8568_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 37080640 - 37080460
Alignment:
| Q |
12 |
agtagcagagaagttgttagaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgtggcagcataccatggaaaa |
111 |
Q |
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| T |
37080640 |
agtagtagagaagttgttagaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgttgcagcatacaatggaaaa |
37080541 |
T |
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| Q |
112 |
catgaggtagtagattacatactacaacaaagtcgtcgaatttgtgaacttgataaaatgataaatcaaaaggataataaa |
192 |
Q |
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| T |
37080540 |
catgaggtagtagattacatactacaacaaagtcgtcgaatttgcgaacttgataaaatgataaatcaaaaggataataaa |
37080460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 37070799 - 37070631
Alignment:
| Q |
20 |
agaagttgttagaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgtggcagcataccatggaaaacatgaggt |
119 |
Q |
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| T |
37070799 |
agaagttgttagaatactgtccagatcccactgagatgcttgacacttcatttaagcgtaatattcttcatgttgcagcaaaaaatggaaagcatgagct |
37070700 |
T |
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| Q |
120 |
agtagattacatactacaacaaagtcgtcgaatttgtgaacttgataaaatgataaatcaaaaggataa |
188 |
Q |
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| T |
37070699 |
agtacaacacatactgctgcaaagtcgtcgaattcctgaacttcataagatgataaatcaaaaggataa |
37070631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 36953641 - 36953740
Alignment:
| Q |
20 |
agaagttgttagaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgtggcagcataccatggaaaacatgaggt |
119 |
Q |
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| T |
36953641 |
agaagttgttggaatattgtcctgatcccacagagatgcttgacacttctcatgagcgtaatattcttcacattgcatcaaactatggaaaatatgaggt |
36953740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 12494603 - 12494439
Alignment:
| Q |
22 |
aagttgttagaatactgtccagatcccacagagatgcttgacacttcatttaagcgtaatattcttcatgtggcagcataccatggaaaacatgaggtag |
121 |
Q |
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| T |
12494603 |
aagttgttagaatattgtcctgatcccacagagatgcttgacacttctcataaacgtaatattcttcatgttgcatcaaaatatggaaaatatgaggtgg |
12494504 |
T |
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| Q |
122 |
tagattacatactacaacaaagtcgtcgaatttgtgaacttgataaaatgataaatcaaaaggataataaa |
192 |
Q |
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| T |
12494503 |
tgcaatacattctacaa------agtcaaattcctggacttgataagatgataaatcaaaaagataataaa |
12494439 |
T |
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