View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8568_low_15 (Length: 202)

Name: NF8568_low_15
Description: NF8568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8568_low_15
NF8568_low_15
[»] chr2 (6 HSPs)
chr2 (15-186)||(38823746-38823922)
chr2 (15-64)||(42149635-42149684)
chr2 (15-66)||(4854473-4854524)
chr2 (15-66)||(4855357-4855408)
chr2 (14-64)||(40321182-40321232)
chr2 (15-68)||(38823220-38823273)
[»] chr7 (5 HSPs)
chr7 (15-186)||(26581975-26582152)
chr7 (13-66)||(25675764-25675817)
chr7 (15-66)||(25674893-25674944)
chr7 (12-64)||(3305921-3305973)
chr7 (10-66)||(41347848-41347904)
[»] chr5 (2 HSPs)
chr5 (10-64)||(31607251-31607305)
chr5 (15-64)||(31608058-31608107)
[»] scaffold0098 (1 HSPs)
scaffold0098 (15-64)||(52264-52313)
[»] chr4 (5 HSPs)
chr4 (13-65)||(44095302-44095354)
chr4 (9-64)||(31414070-31414125)
chr4 (15-61)||(31414870-31414916)
chr4 (15-64)||(17869644-17869693)
chr4 (15-64)||(27340775-27340824)
[»] chr3 (3 HSPs)
chr3 (14-62)||(44637786-44637834)
chr3 (15-64)||(52103515-52103564)
chr3 (12-64)||(40613052-40613104)
[»] chr8 (2 HSPs)
chr8 (15-57)||(34587359-34587401)
chr8 (14-52)||(38443033-38443071)
[»] scaffold0330 (1 HSPs)
scaffold0330 (13-61)||(12515-12563)
[»] chr1 (3 HSPs)
chr1 (12-62)||(7338820-7338870)
chr1 (11-61)||(15668302-15668352)
chr1 (14-64)||(30430444-30430494)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 5e-64; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 38823922 - 38823746
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatgtaca-atgtgt----tgtggcggtaacaaatctaatggttgatattaaaa 109  Q
    |||||||||||| || ||||||||||||||| |||||||| ||||||||||| | ||||||    |||||||||||||||||||||||||||||||||||    
T  38823922 gagttcatctttccttcatttaagtctcctcaatttactctttttcaatgtatagatgtgtgacatgtggcggtaacaaatctaatggttgatattaaaa 38823823  T
Q  110 atcaaattaaaagacacgatgtatgttgaagctttctctgatgtaacaacattccaccttttcatcttcttcatctc 186  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38823822 atcaaattaaaagacacgctgtatgttgaagctttctctgatgtaacaacattccaccttttcatcttcttcctctc 38823746  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 42149684 - 42149635
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||    
T  42149684 gagttcatctttgctccatttaacattcctccatttactccttttcaatg 42149635  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 4854473 - 4854524
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatgta 66  Q
    |||||||||||||||||||||| ||   ||||||||||||||||||||||||    
T  4854473 gagttcatctttgctccatttatgttgactccatttactccttttcaatgta 4854524  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 4855408 - 4855357
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatgta 66  Q
    |||||||||||||||||||||| || | ||| ||||||||||||||||||||    
T  4855408 gagttcatctttgctccatttatgtttgctcaatttactccttttcaatgta 4855357  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 40321232 - 40321182
Alignment:
Q  14 tgagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    |||||||||||||||||||||||    | ||||||||||||||||||||||    
T  40321232 tgagttcatctttgctccatttagccttgctccatttactccttttcaatg 40321182  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 38823220 - 38823273
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatgtaca 68  Q
    ||||||||||||||||||||||  | | ||||||||||||||||| ||| ||||    
T  38823220 gagttcatctttgctccatttatatttgctccatttactccttttgaatttaca 38823273  T

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Target: chr7 (Bit Score: 117; Significance: 8e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 26581975 - 26582152
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatgtaca---atgtgt--tgtggcggtaacaaatctaatggttgatattaaaa 109  Q
    ||||| |||||||||||||||||||||||| |||||||||||||| ||||||||   |||||   |||||||||||||||||||||||||||||||||||    
T  26581975 gagtttatctttgctccatttaagtctccttcatttactcctttttaatgtacagatatgtgacatgtggcggtaacaaatctaatggttgatattaaaa 26582074  T
Q  110 atcaaattaaaagacacgatgtatgttgaagc-tttctctgatgtaacaacattccaccttttcatcttcttcatctc 186  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||    
T  26582075 atcaaattaaaagacacgttgtatgttgaagcttttctccgatgtaacaacattccaccttttcatcttcttcctctc 26582152  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 25675817 - 25675764
Alignment:
Q  13 atgagttcatctttgctccatttaagtctcctccatttactccttttcaatgta 66  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||||||||    
T  25675817 atgagttcatctttgctccatttatgttggctccatttactccttttcaatgta 25675764  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 25674893 - 25674944
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatgta 66  Q
    |||||||||||||||||||||  || | ||| ||||||||||||||||||||    
T  25674893 gagttcatctttgctccatttgtgtttgctcaatttactccttttcaatgta 25674944  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 3305921 - 3305973
Alignment:
Q  12 tatgagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    |||||||||||||||||||||||| |   ||||||||||||| |||| |||||    
T  3305921 tatgagttcatctttgctccattttacattcctccatttacttctttccaatg 3305973  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 41347904 - 41347848
Alignment:
Q  10 attatgagttcatctttgctccatttaagtctcctccatttactccttttcaatgta 66  Q
    |||||||||||||||||||| |||||||   | ||||||||| ||||||| ||||||    
T  41347904 attatgagttcatctttgcttcatttaaccttactccatttaatccttttgaatgta 41347848  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 31607251 - 31607305
Alignment:
Q  10 attatgagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    |||| |||||||||||||||||||||||   ||||||||||||||||||||||||    
T  31607251 attacgagttcatctttgctccatttaacgttcctccatttactccttttcaatg 31607305  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 31608107 - 31608058
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    |||||||||||||||||||||||   ||||||| ||||| ||||||||||    
T  31608107 gagttcatctttgctccatttaacattcctccaattacttcttttcaatg 31608058  T

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Target: scaffold0098 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 52264 - 52313
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    |||||||||||||||||||||  || ||||||||||||||||||||||||    
T  52264 gagttcatctttgctccatttttgtttcctccatttactccttttcaatg 52313  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 44095302 - 44095354
Alignment:
Q  13 atgagttcatctttgctccatttaagtctcctccatttactccttttcaatgt 65  Q
    |||||||||||||||||||||||   | |||||||||||||||||||||||||    
T  44095302 atgagttcatctttgctccattttgatttcctccatttactccttttcaatgt 44095354  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 31414070 - 31414125
Alignment:
Q  9 tattatgagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    ||||| |||||||||||||||||||||| || | |||||||| ||| |||||||||    
T  31414070 tattaggagttcatctttgctccatttatgtttgctccatttgctcattttcaatg 31414125  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 31414916 - 31414870
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttca 61  Q
    |||| |||||||||||||||||||| ||||| ||||| |||||||||    
T  31414916 gagtccatctttgctccatttaagtttcctcaatttattccttttca 31414870  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 17869644 - 17869693
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    ||||||||||||||||||||||    | ||||||||||||||||||||||    
T  17869644 gagttcatctttgctccatttagccttgctccatttactccttttcaatg 17869693  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 27340824 - 27340775
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    ||||||||||||||||||||||    |||||||||||||||||| |||||    
T  27340824 gagttcatctttgctccatttagtattcctccatttactcctttccaatg 27340775  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 44637834 - 44637786
Alignment:
Q  14 tgagttcatctttgctccatttaagtctcctccatttactccttttcaa 62  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  44637834 tgagttcatctttgctccatctaagtatgctccatttactccttttcaa 44637786  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 52103564 - 52103515
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||||    
T  52103564 gagttcatctttgctccatttaacattcctccatttactcctttccaatg 52103515  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 40613052 - 40613104
Alignment:
Q  12 tatgagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    ||||||||||||||||||||||||||   | ||||||||| ||||||| ||||    
T  40613052 tatgagttcatctttgctccatttaaccttactccatttaatccttttgaatg 40613104  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 34587401 - 34587359
Alignment:
Q  15 gagttcatctttgctccatttaagtctcctccatttactcctt 57  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  34587401 gagttcatctttgctccatttaagtttcctcaatttactcctt 34587359  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 38443033 - 38443071
Alignment:
Q  14 tgagttcatctttgctccatttaagtctcctccatttac 52  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  38443033 tgagtccatctttgctccatttaagtctgctccatttac 38443071  T

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Target: scaffold0330 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 12515 - 12563
Alignment:
Q  13 atgagttcatctttgctccatttaagtctcctccatttactccttttca 61  Q
    |||||||||||||||||| |||||||| ||||| ||||| |||||||||    
T  12515 atgagttcatctttgctctatttaagtttcctcaatttattccttttca 12563  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 7338870 - 7338820
Alignment:
Q  12 tatgagttcatctttgctccatttaagtctcctccatttactccttttcaa 62  Q
    ||||||| ||||||||||||||||| || ||||| ||||||||| ||||||    
T  7338870 tatgagtccatctttgctccatttatgtttcctcaatttactccatttcaa 7338820  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 15668352 - 15668302
Alignment:
Q  11 ttatgagttcatctttgctccatttaagtctcctccatttactccttttca 61  Q
    |||||||| |||||||||||||||||||    |||||||||||||||||||    
T  15668352 ttatgagtccatctttgctccatttaagaaggctccatttactccttttca 15668302  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 30430494 - 30430444
Alignment:
Q  14 tgagttcatctttgctccatttaagtctcctccatttactccttttcaatg 64  Q
    |||||||||||||||||||||||    |||||||||||||||||| |||||    
T  30430494 tgagttcatctttgctccatttagtattcctccatttactcctttccaatg 30430444  T

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