View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8568_low_3 (Length: 433)
Name: NF8568_low_3
Description: NF8568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8568_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 46 - 311
Target Start/End: Complemental strand, 50767747 - 50767465
Alignment:
| Q |
46 |
ttaattaacttttatatagttagagaaagatgtttgtgaatttacnnnnnnnctactaatgtaacatgttatgacggtatcccttgtga----------- |
134 |
Q |
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| T |
50767747 |
ttaattaacttttatatagttagagaaagatgtttgtgaatttacaaaaaaactagtaatgtaacatgttatgacggtatcccttgtgaaggcgtcctga |
50767648 |
T |
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| Q |
135 |
------tatttttcatgaatatttcgtccttattccatttgtcttttgttttcatctgtacaatttaaaaatgcaccatctatctcattccattcattca |
228 |
Q |
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| T |
50767647 |
gagagatatttttcatgaatatttcgtccttattccatttgtcttttgttttcatctgtacaatttaaaaatgcaccatctatctcattccattcattca |
50767548 |
T |
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| Q |
229 |
tatttcattatccacaccaggccacttcatgaatgatgtaagctcccactccacctcatttcattcaatctcattcctgttac |
311 |
Q |
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| T |
50767547 |
tatttcattatccacaccaggccacttcatgaatgatgtaagctcccactccacctcatttcattcaatctcattcctgttac |
50767465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 50767470 - 50767419
Alignment:
| Q |
366 |
tgttactttgattaactggatcagtggcattaaaatcaaggtgattaattct |
417 |
Q |
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| T |
50767470 |
tgttactttgattaactggatcagtggcattaaaatcaaggtgattaattct |
50767419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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