View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8568_low_4 (Length: 426)
Name: NF8568_low_4
Description: NF8568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8568_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 29343724 - 29344119
Alignment:
| Q |
1 |
attatacggaaatgctacttctcacgagaatttgcatagcgaatacgtcacaacttctttttaggttgaaattccttttatccaatggtctattatttcc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29343724 |
attatacggaaatgctacttctcgtgagaatttgcatagcgaaaacgtcacgacttctttttatgttgaaattccttttatccaacggtctattatttcc |
29343823 |
T |
|
| Q |
101 |
accattgaatatccaatggtagcagtcaattcgcgagaccttcttgatgaattgtttcgctgaaaatagcatttctgtt-ttagtaacttgactttgtca |
199 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
29343824 |
accattgaa------------gcagtcaattcgcgagaccttcttgatgtattgtttcgctgaaaatagcattgccgtcattagtaacttgactttgtca |
29343911 |
T |
|
| Q |
200 |
caaaacaaaataatttcattgaaggttaatttttattgatttaatttatttgttaaggatccaaacaatgggaattggtggcttgaattagaatctggca |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29343912 |
caaaacaaaataatttcattaaaggttaatttt-attgatttaatttttttgttaaggatccaaacaatgggaattggtggcttgaattagaatctggca |
29344010 |
T |
|
| Q |
300 |
tacatattggctattggccagcttccttgttcacagaattaaagggtgaagcatattttgctgaattcggcggagaagtgttcaatttaaagccatcagg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29344011 |
tacatattggctattggccagcttccttgttcacagaattaaagggtgaagcatattttgctgaattcggcggagaagtgttcaatttaaagccatcagg |
29344110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 29343500 - 29343389
Alignment:
| Q |
72 |
ttccttttatccaatggtctattatttccaccattgaatat----ccaatggtagcagtcaattcgcgagaccttcttgatgaattgtttcgctgaaaat |
167 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
29343500 |
ttccttttatctatcggtctattatttccaccattgaatatatatccaatggtagcagtcaattcgcgagactttcgtgatgtattgtttcgctgaaaat |
29343401 |
T |
|
| Q |
168 |
agcatttctgtt |
179 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
29343400 |
agcattgctgtt |
29343389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 391
Target Start/End: Original strand, 29312543 - 29312679
Alignment:
| Q |
255 |
aggatccaaacaatgggaattggtggcttgaattagaatctggcatacatattggctattggccagcttccttgttcacagaattaaagggtgaagcata |
354 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| | |||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29312543 |
aggatccaaatagtgggaattggtggcttgaatatggatctggaaattttcttggctattggccagccaccttgttcacagaattaaagggtgaagcata |
29312642 |
T |
|
| Q |
355 |
ttttgctgaattcggcggagaagtgttcaatttaaag |
391 |
Q |
| |
|
| ||| |||||| || |||||||| ||||||||||| |
|
|
| T |
29312643 |
tattgttgaatttggtggagaagttctcaatttaaag |
29312679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 29343590 - 29343524
Alignment:
| Q |
5 |
tacggaaatgctacttctcacgagaatttgcatagcgaatacgtcacaacttctttttaggttgaaa |
71 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
29343590 |
tacggaaatgctacttctcgcgagaatttgcatagcgaaaacgtcacaacttctctttaggttgaaa |
29343524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 10931905 - 10931855
Alignment:
| Q |
123 |
cagtcaattcgcgagaccttcttgatgaattgtttcgctgaaaatagcatt |
173 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
10931905 |
cagtcaattcgcgagaccttcgtgatgtattgtttcgctggaaatagcatt |
10931855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 409
Target Start/End: Original strand, 29359120 - 29359203
Alignment:
| Q |
326 |
ttgttcacagaattaaagggtgaagcatattttgctgaattcggcggagaagtgttcaatttaaagccatcaggggctcatact |
409 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||| || |||||||| | ||||||| | ||||||| |||||||| |
|
|
| T |
29359120 |
ttgttcaacgaattaaagggtgaagcatattttgctcaatttggtggagaagtactgaatttaatgagatcagggtctcatact |
29359203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University