View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_high_16 (Length: 231)
Name: NF8569_high_16
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 8446159 - 8446350
Alignment:
| Q |
14 |
taatacttcaagaactagcctatttagtttgatttgatgagaattacctaaacattgaagtagatgagtaaaatatacaactaaatcagctaaatgcttc |
113 |
Q |
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| T |
8446159 |
taatacttcaagaactagcctatttagtttgatttgatgagaattacctaaacattgaagtagatgagtaaaatataccactaaat---------gtttc |
8446249 |
T |
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| Q |
114 |
aacaaatgcttcaatcttcttctaatcacaatcaaatctgaaatccatcatgagaaaattggtgatgagaaaaaatataccactacaatacatcagatac |
213 |
Q |
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| T |
8446250 |
aacaaatgcttcaatcttcttctaatcacaatcaaatctgaaatccatcatgagaaaattggagatgagaaaaaatataccactacaatacatcagatac |
8446349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 8365083 - 8365140
Alignment:
| Q |
113 |
caacaaatgcttcaatcttcttctaatcacaatcaaatctgaaatccatcatgagaaa |
170 |
Q |
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| T |
8365083 |
caacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtcatgagaaa |
8365140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 8420296 - 8420395
Alignment:
| Q |
116 |
caaatgcttcaatcttcttctaatcacaatcaaatctgaaatccatcatgagaaa-attg---gtgatgagaaaaaatataccactacaatacatcagat |
211 |
Q |
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||||||| || |||||||||||||||| || ||||| ||||||||||||| || |||| | ||||||||||||||||||||| |||||||||||| |
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| T |
8420296 |
caaatgcgtcgatcttcttctaatcac--tccaatctaaaatccatcatgaaaattattgaaggagatgagaaaaaatataccactgtaatacatcagat |
8420393 |
T |
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