View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8569_high_2 (Length: 484)

Name: NF8569_high_2
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8569_high_2
NF8569_high_2
[»] chr5 (9 HSPs)
chr5 (148-480)||(37306954-37307286)
chr5 (17-149)||(37306533-37306680)
chr5 (239-410)||(35811234-35811403)
chr5 (132-271)||(36868510-36868651)
chr5 (132-351)||(32278445-32278667)
chr5 (132-445)||(788016-788325)
chr5 (223-444)||(19215453-19215673)
chr5 (136-269)||(1442695-1442830)
chr5 (209-271)||(20817526-20817589)
[»] chr2 (9 HSPs)
chr2 (163-442)||(14296029-14296305)
chr2 (132-283)||(18811475-18811628)
chr2 (132-445)||(18693171-18693485)
chr2 (313-445)||(31092386-31092518)
chr2 (132-278)||(30180028-30180177)
chr2 (132-237)||(37344845-37344951)
chr2 (299-445)||(37344689-37344835)
chr2 (134-187)||(31092617-31092672)
chr2 (134-219)||(13502853-13502940)
[»] chr4 (8 HSPs)
chr4 (253-445)||(24239701-24239893)
chr4 (132-441)||(18522034-18522345)
chr4 (136-445)||(37050071-37050382)
chr4 (239-441)||(16831983-16832186)
chr4 (174-265)||(10046558-10046649)
chr4 (392-445)||(16593766-16593819)
chr4 (392-445)||(19852554-19852607)
chr4 (313-361)||(7500231-7500279)
[»] chr3 (6 HSPs)
chr3 (132-445)||(35526297-35526611)
chr3 (148-441)||(29346872-29347167)
chr3 (132-261)||(18028325-18028457)
chr3 (132-237)||(51525109-51525216)
chr3 (200-362)||(49106841-49107005)
chr3 (132-162)||(21844695-21844725)
[»] chr6 (6 HSPs)
chr6 (139-446)||(25167912-25168221)
chr6 (132-438)||(3949411-3949720)
chr6 (163-284)||(5605437-5605559)
chr6 (209-441)||(4263181-4263415)
chr6 (132-269)||(2606605-2606744)
chr6 (127-286)||(10990217-10990379)
[»] chr1 (6 HSPs)
chr1 (197-442)||(14344128-14344372)
chr1 (198-404)||(13061765-13061971)
chr1 (132-375)||(44163496-44163741)
chr1 (132-283)||(41034780-41034933)
chr1 (316-370)||(41034940-41034994)
chr1 (389-445)||(49491874-49491930)
[»] chr8 (8 HSPs)
chr8 (132-283)||(27786548-27786701)
chr8 (239-442)||(28225556-28225760)
chr8 (313-418)||(29369200-29369305)
chr8 (136-232)||(3072279-3072377)
chr8 (199-331)||(3801149-3801281)
chr8 (132-191)||(14295239-14295300)
chr8 (132-185)||(399505-399560)
chr8 (316-368)||(13885884-13885936)
[»] chr7 (6 HSPs)
chr7 (138-417)||(34547978-34548259)
chr7 (132-307)||(29132183-29132361)
chr7 (148-372)||(7543857-7544081)
chr7 (171-287)||(16099789-16099906)
chr7 (132-334)||(19407629-19407832)
chr7 (198-286)||(26180318-26180407)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 148 - 480
Target Start/End: Original strand, 37306954 - 37307286
Alignment:
Q  148 taaaatataaaagacgagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaagaaggaaatgtcc 247  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37306954 taaaatataaaagacaagagacttgaaccaatacaacaaagtcacaaaatgtaaaatctacgaaaagaaaaatcggatctatcccaagaaggaaatgtca 37307053  T
Q  248 taaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctacaagactacactctctttgaa 347  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  37307054 taaggaaagaggtgtcaaagaccatcattgtacataaaacctagtcatataatgagcatttttggccaaacaactgctacaagactacactctctgtgaa 37307153  T
Q  348 aatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttagaggtacccttttgggcata 447  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||||    
T  37307154 aatttgaacaaaagtattgatatttccagttattcttttgtaattgaaccaactattatgtatctgccaagacagctttaaaggtacccttttgagcata 37307253  T
Q  448 ggcactttgttcacctgcttcttcttctctctc 480  Q
    || ||||||||||| ||||||||||||| ||||    
T  37307254 ggtactttgttcacatgcttcttcttctttctc 37307286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 37306533 - 37306680
Alignment:
Q  17 attattatgatacaaggttttttcaaagcggataacaccgttttattatatc--------------aatgttactcgctaatcgatacataattttaaaa 102  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||    
T  37306533 attattatgatactaggctttttcaaagcggataacaccgttttattatatcaatataacattatcaatgttactcgctaatcgatacataattttaaaa 37306632  T
Q  103 tttcactattgaattaaaaatttatatac--ttttttatcaaaacacta 149  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  37306633 tttcactattgaattaaaaa-ttatatacttttttttatcaaaacacta 37306680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 239 - 410
Target Start/End: Complemental strand, 35811403 - 35811234
Alignment:
Q  239 gaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctacaagactacact 338  Q
    |||||||||||||||||||||| ||||| || | ||| ||| |||||| ||||||| || ||||  ||| |||| |||||||| |||| |||||||| ||    
T  35811403 gaaatgtcctaaggaaagaggtatcaaaaacaagcatcgtaaagaaaaactagtcaaattatgattattcttggtcaaacaacggctaaaagactaccct 35811304  T
Q  339 ctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatat 410  Q
    || |  |||||||||||||||||||||| ||||||||| |||| |  || |||||||||||||||| |||||    
T  35811303 ctat--gaaaatttgaacaaaagtattggtattcccaaatattatgttgcaattgaaccaactattttatat 35811234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 132 - 271
Target Start/End: Complemental strand, 36868651 - 36868510
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    ||||||||||||||||||||||||||||||   ||||| | ||||||||||||||| ||||| ||  ||||| | ||| |||||||||||||||||||||    
T  36868651 ttttttatcaaaacactaaaatataaaagataggagaggcctgaaccaatacaacacagtcacaatgtgtaagacctatgaaaagaaaaatcggatctat 36868552  T
Q  230 cccaag-aaggaaatgtcctaaggaaagaggtgtcaaagacca 271  Q
    |||||| ||||||| | ||||| |||| |||||||||||||||    
T  36868551 cccaagaaaggaaaagacctaa-gaaaaaggtgtcaaagacca 36868510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 132 - 351
Target Start/End: Original strand, 32278445 - 32278667
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagacga-gagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatc 230  Q
    |||||||||||  || |||||||||||||  || ||| | |||||||||||| || ||||| | | ||||||| ||| ||||||| ||| ||||||||||    
T  32278445 ttttttatcaaggcaataaaatataaaagcagaagaggcctgaaccaatacatcagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatc 32278544  T
Q  231 ccaag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtc-atataatgaacatttttggccaaacaactgctaca 328  Q
    ||||| || | |||||||||||||| |||||||||||||| | || || |||||||| |||||| | |  |||| |||| |||||||||||||  ||| |    
T  32278545 ccaagaaaaggaatgtcctaaggaacgaggtgtcaaagacaaccaatgaacagaaaaactagtcaaaagtatgaccattcttggccaaacaacgactaaa 32278644  T
Q  329 agactacactctctttgaaaatt 351  Q
    ||||||| ||||||  |||||||    
T  32278645 agactactctctctaagaaaatt 32278667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 132 - 445
Target Start/End: Original strand, 788016 - 788325
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    ||||||||||||||| |||||||||||||||  ||||  | |||||||||||||||  |||  | | |||||||||||  |||||| |||  | ||||||    
T  788016 ttttttatcaaaacaataaaatataaaagacaggagaagcctgaaccaatacaacatggtcgcatagtgtaaaatctataaaaagagaaaatgaatctat 788115  T
Q  230 cccaag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctaca 328  Q
     ||||| |||||||   | |||||||||||||||||||||| | |||||||   |||| |||| || || |||| ||||  ||||||||| || |||| |    
T  788116 tccaagaaaggaaagaccttaaggaaagaggtgtcaaagacaaccattgta---aaaaactagacaaattatgaccattcatggccaaaccacagctaaa 788212  T
Q  329 agactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttag 428  Q
    ||||||| ||||||    |||||||||||||||| ||| ||||| |   ||||||  || ||||||||||| |||| ||||| || |||| |  |||| |    
T  788213 agactaccctctct---gaaatttgaacaaaagt-ttggtattctccgatattctgttgcaattgaaccaattattctatatatgtcaaggcggctttgg 788308  T
Q  429 aggtacccttttgggca 445  Q
    ||| |||||||||||||    
T  788309 aggaacccttttgggca 788325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 444
Target Start/End: Complemental strand, 19215673 - 19215453
Alignment:
Q  223 gatctatcccaagaa-ggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaac 321  Q
    ||||||| ||||||| ||||| | ||||| |||| ||||||||||||| | |||| |||||||||| |||||| || |||    || |||||||||||||    
T  19215673 gatctattccaagaaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaac-tagtcaaattatgtctgttcttggccaaacaac 19215575  T
Q  322 tgctacaagactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagaca 421  Q
     |||| |||||| | |||||| |||||||||||| | ||||||||| ||||| |   |||| |||| ||||  |||||||||| | ||||||||||| ||    
T  19215574 agctaaaagactgccctctctgtgaaaatttgaatagaagtattgacattcctagaaattc-tatgcaattcgaccaactattctgtatctgccaaggca 19215476  T
Q  422 actttagaggtacccttttgggc 444  Q
      |||  ||||||||||||||||    
T  19215475 gttttgaaggtacccttttgggc 19215453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 1442695 - 1442830
Alignment:
Q  136 ttatcaaaacactaaaatataaaag-acgagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaa 234  Q
    |||||||| || ||||||||||||| | ||||| | |||||||||||| || ||||| | | |||||||  || ||||||| ||| | ||||||||||||    
T  1442695 ttatcaaagcaataaaatataaaagcaggagaggcatgaaccaatacatcagagtcacatattgtaaaacataagaaaagagaaaccagatctatcccaa 1442794  T
Q  235 g-aaggaaatgtcctaaggaaagaggtgtcaaagac 269  Q
    | |||| |||||||||  |||  |||||||||||||    
T  1442795 gaaagggaatgtcctactgaacaaggtgtcaaagac 1442830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 20817526 - 20817589
Alignment:
Q  209 gaaaagaaaaatcggatctatcccaag-aaggaaatgtcctaaggaaagaggtgtcaaagacca 271  Q
    ||||||||||||| ||||||||| ||| ||||||  ||| || |||||||||||||||||||||    
T  20817526 gaaaagaaaaatcagatctatcctaagaaaggaagagtcgtatggaaagaggtgtcaaagacca 20817589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 163 - 442
Target Start/End: Original strand, 14296029 - 14296305
Alignment:
Q  163 gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaagaaggaaatgtcctaaggaaagaggtgt 262  Q
    ||||||| |||||| ||||| || | ||| ||| || |||| ||| |||||||||||||  ||||||||||||||||||| ||| |||||||||||||||    
T  14296029 gagagacctgaaccgatacagcacaatcacaaagtgaaaaacctatgaaaagaaaaatcaaatctatcccaagaaggaaaggtcttaaggaaagaggtgt 14296128  T
Q  263 caaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctacaagactacactctctttgaaaatttgaacaaaagt 362  Q
    ||||||||| ||||| |  ||||| |||| || ||||||| |||| ||| |||| |||||||||||||||||| ||||    ||||||||||||||||||    
T  14296129 caaagaccaccattgcagggaaaaactagacaaataatgaccattcttg-ccaatcaactgctacaagactaccctctac--gaaaatttgaacaaaagt 14296225  T
Q  363 attgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttagaggtacccttttgg 442  Q
    ||| ||||||||| |||||||  || |||||||||||||||||| ||||||||||| || |||| |||||||||||||||    
T  14296226 atttatattcccacttattctattgcaattgaaccaactattatgtatctgccaaggcatctttggaggtacccttttgg 14296305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 283
Target Start/End: Original strand, 18811475 - 18811628
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    |||||||||||| ||||||||||||||||||  ||||| | ||||||||||||||| ||| | || |||||||| ||| |||||| ||| ||||||||||    
T  18811475 ttttttatcaaagcactaaaatataaaagacaggagaggcctgaaccaatacaacagagttacaatatgtaaaacctatgaaaagtaaattcggatctat 18811574  T
Q  230 cccaag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacaga 283  Q
    |||||| ||||| | | |||| ||||| ||||||||||||||| ||| |||||||    
T  18811575 cccaagaaaggagaagacctatggaaa-aggtgtcaaagaccaccatagtacaga 18811628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 445
Target Start/End: Complemental strand, 18693485 - 18693171
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagacgagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcc 231  Q
    |||||||||||| ||||||||||||||| | || |   |||||||||||||| ||||||| | | || ||||  |  |||||||||| || |||||||||    
T  18693485 ttttttatcaaatcactaaaatataaaacaggaaatgtttgaaccaatacaagaaagtcacatagtggaaaacatgtgaaaagaaaattcagatctatcc 18693386  T
Q  232 caag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggcca-aacaactgctacaa 329  Q
      || || |||| |||||||||||||||||| |  ||   | |||||||||||||| |||  || || |||| ||||  || ||| ||||||||||||||    
T  18693385 ttagcaatgaaaggtcctaaggaaagaggtggcttagtttaccattgtacagaaaagctatgcagattatgatcattcatgaccataacaactgctacaa 18693286  T
Q  330 gactacactctctttgaaaatttgaacaaaagtattgatattcccaat--tattcttatgtaattgaaccaactattatatatctgccaagacaacttta 427  Q
     ||||| |||||| |||||  ||  ||||||| ||| ||||||   ||  |||||| ||| |||||||||||||||| | |||||| ||||||||||||     
T  18693285 tactaccctctctatgaaagattctacaaaagcattaatattc---atgctattctaatgcaattgaaccaactattttgtatctgtcaagacaactttg 18693189  T
Q  428 gaggtacccttttgggca 445  Q
    |||| |||||||| ||||    
T  18693188 gaggaacccttttaggca 18693171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 445
Target Start/End: Complemental strand, 31092518 - 31092386
Alignment:
Q  313 ccaaacaactgctacaagactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatct 412  Q
    ||||||||| |||| |||||||| |||||| |||||||||||||||||| |||||  |||||   |||||| ||| || || |||||||||| | |||||    
T  31092518 ccaaacaacagctaaaagactaccctctctatgaaaatttgaacaaaagcattgacgttcccggatattctaatgcaaatggaccaactattctgtatct 31092419  T
Q  413 gccaagacaactttagaggtacccttttgggca 445  Q
    | |||||| ||||| ||||||||||||||||||    
T  31092418 ggcaagacgactttggaggtacccttttgggca 31092386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 278
Target Start/End: Complemental strand, 30180177 - 30180028
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagacgagaga--cttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    |||||||||||| || ||||||||||| |||||||||  | |||| ||||||| || ||||| ||| ||||||||||| |||||||||||| | |||| |    
T  30180177 ttttttatcaaagcaataaaatataaacgacgagagaggcctgaatcaatacaccagagtcacaaagtgtaaaatctatgaaaagaaaaattgaatctgt 30180078  T
Q  230 -cccaagaaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgt 278  Q
     |  || ||||||| ||||||||||||||||||||||||| || ||||||    
T  30180077 actaaaaaaggaaaggtcctaaggaaagaggtgtcaaagatcaccattgt 30180028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 37344951 - 37344845
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaag-acgagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatc 230  Q
    |||||||||||| || ||||||||||||| | |||||  ||||||||||||| || ||||| | | ||||||| ||||||||||| ||||||||||||||    
T  37344951 ttttttatcaaagcaataaaatataaaagcaggagaggtttgaaccaatacatcagagtcacatagtgtaaaacctacgaaaagagaaatcggatctatc 37344852  T
Q  231 ccaagaa 237  Q
    |||||||    
T  37344851 ccaagaa 37344845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 445
Target Start/End: Complemental strand, 37344835 - 37344689
Alignment:
Q  299 atgaacatttttggccaaacaactgctacaagactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaacca 398  Q
    |||| |||| |||||||||||||  ||| |||||||| |||| |  |||||||||||||||| ||||| ||||||||  |||| |  || || |||| ||    
T  37344835 atgaccattcttggccaaacaacgactagaagactactctctataagaaaatttgaacaaaaatattggtattcccagatattatgctgcaaatgaatca 37344736  T
Q  399 actattatatatctgccaagacaactttagaggtacccttttgggca 445  Q
    |||||||| ||| || |||| |  |||| ||| ||||||||||||||    
T  37344735 actattatgtatatgtcaaggcggctttggagatacccttttgggca 37344689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 31092672 - 31092617
Alignment:
Q  134 ttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaa 187  Q
    |||||||||| || |||||||||||||||  ||||||| |||||||||||||||||    
T  31092672 ttttatcaaagcaataaaatataaaagacgggagagacctgaaccaatacaacaaa 31092617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 13502940 - 13502853
Alignment:
Q  134 ttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaa 219  Q
    |||||||||| ||||||||||||||||||  ||||  | |||| |||||||||| ||||| ||| |||| || || ||||||| ||||    
T  13502940 ttttatcaaagcactaaaatataaaagacaggagatgcatgaatcaatacaacagagtcagaaagtgtataacctgcgaaaaggaaaa 13502853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 253 - 445
Target Start/End: Original strand, 24239701 - 24239893
Alignment:
Q  253 aaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctacaagactacactctctttgaaaattt 352  Q
    |||||||| |||||||||| |||| ||| ||||| |||||||||| ||||  ||| ||||||||||||||  |||||||||||  | ||| |||||||||    
T  24239701 aaagaggtatcaaagaccaccattatactgaaaaactagtcatattatgacaattcttggccaaacaactattacaagactaccatttctatgaaaattt 24239800  T
Q  353 gaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttagaggtacccttttgggca 445  Q
    ||||||||||||||||||||||  |||||||| ||||||||| ||||||||||| |||||||||||| | |||| ||||||||||||||||||    
T  24239801 gaacaaaagtattgatattccctgttattcttttgtaattgagccaactattatgtatctgccaagatagcttttgaggtacccttttgggca 24239893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 132 - 441
Target Start/End: Original strand, 18522034 - 18522345
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    |||||||||||| || |||||||||||||||  ||||| | |||||||||| | || ||||| | || | |||| |||| |||| ||||| |||||||||    
T  18522034 ttttttatcaaagcaataaaatataaaagacaggagaggcctgaaccaatatatcagagtcacataagg-aaaacctacaaaaacaaaaaccggatctat 18522132  T
Q  230 cccaagaag-gaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctaca 328  Q
    ||||| ||  |||| ||||||||||||||||| |||||||| | || || ||| |||| |||| || || |||| |||| ||||||||||||  ||||      
T  18522133 cccaaaaaatgaaaggtcctaaggaaagaggtttcaaagacaaccaatggacataaaaactagacaaattatgaccattcttggccaaacaaaagctaat 18522232  T
Q  329 agactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttag 428  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||| | ||||||  || || ||||||||||||| ||||||||||||| | ||||| |    
T  18522233 agactatactctctatgaaaatttgaacaaaagtattcatattcccgaatattctgctgcaactgaaccaactattctatatctgccaagtcgactttgg 18522332  T
Q  429 aggtacccttttg 441  Q
    ||| | |||||||    
T  18522333 aggcatccttttg 18522345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 136 - 445
Target Start/End: Complemental strand, 37050382 - 37050071
Alignment:
Q  136 ttatcaaaacactaaaatataaaag-acgagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaa 234  Q
    |||||||| || ||||||||||||| | ||||| |  |||||||||||||| ||||| | | ||||||| ||| ||||||| |||  |||||||||||||    
T  37050382 ttatcaaagcaataaaatataaaagcatgagaggcccgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaactggatctatcccaa 37050283  T
Q  235 gaa-ggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatata-atgaacatttttggccaaacaactgctacaagac 332  Q
     || || ||||||| |||||| ||||| |||||||| | || || ||| ||||| |||||| |   |||| |||  |||||||||||||  ||| |||||    
T  37050282 taaagggaatgtccaaaggaacgaggtatcaaagacaaccaatgaacaaaaaac-tagtcaaaagtatgaccatacttggccaaacaacgactaaaagac 37050184  T
Q  333 tacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttagaggt 432  Q
    ||| |||||| ||||||||||||||||||||||| ||||||||  ||||||  || |||||||||||||||| | |||||  |||  |  |||| |||||    
T  37050183 tactctctctatgaaaatttgaacaaaagtattggtattcccatatattctgttgcaattgaaccaactattttgtatctctcaaagcggctttggaggt 37050084  T
Q  433 acccttttgggca 445  Q
    |||||||||||||    
T  37050083 acccttttgggca 37050071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 441
Target Start/End: Original strand, 16831983 - 16832186
Alignment:
Q  239 gaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggcca-aacaactgctacaagactacac 337  Q
    |||| ||||||| |||||| || |||||||||| | | ||||| |||| ||||||| || |||| |||| |||  || ||||| || ||||| ||||  |    
T  16831983 gaaaagtcctaaagaaagaagtttcaaagaccaccgtagtacacaaaagctagtcagattatgatcattcttgatcataacaaatgttacaaaactatcc 16832082  T
Q  338 tctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttagaggtaccct 437  Q
    ||||| |||||||||||  ||||||||||||||||| |  |||||| ||| || |||||| |||||||| |||||||||||||| |||| |||| |||||    
T  16832083 tctctatgaaaatttgagtaaaagtattgatattcctagctattctgatgcaaatgaaccgactattatgtatctgccaagacagctttggaggcaccct 16832182  T
Q  438 tttg 441  Q
    ||||    
T  16832183 tttg 16832186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 10046558 - 10046649
Alignment:
Q  174 accaatacaacaaagtcataaaatgtaaaa-tctacgaaaagaaaaatcggatctatcccaagaaggaaatgtcctaaggaaagaggtgtcaa 265  Q
    ||||||||||||| |||||||||||||||| | || ||||||||||| || ||||||||||  |||||   |||||||| ||| |||||||||    
T  10046558 accaatacaacaa-gtcataaaatgtaaaaatttatgaaaagaaaaaccgaatctatcccagaaaggatgagtcctaagaaaaaaggtgtcaa 10046649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 16593766 - 16593819
Alignment:
Q  392 tgaaccaactattatatatctgccaagacaactttagaggtacccttttgggca 445  Q
    ||||||||||||||| || |||||||||||||||| | | ||| ||||||||||    
T  16593766 tgaaccaactattatgtagctgccaagacaactttggcgttactcttttgggca 16593819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 19852607 - 19852554
Alignment:
Q  392 tgaaccaactattatatatctgccaagacaactttagaggtacccttttgggca 445  Q
    |||||||||||||||  | |||||||||||||||| ||| ||| ||||||||||    
T  19852607 tgaaccaactattatgaagctgccaagacaactttggagttactcttttgggca 19852554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 7500279 - 7500231
Alignment:
Q  313 ccaaacaactgctacaagactacactctctttgaaaatttgaacaaaag 361  Q
    ||||||||  |||| |||||||| |||||| ||||||||||||||||||    
T  7500279 ccaaacaagagctaaaagactaccctctctatgaaaatttgaacaaaag 7500231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 132 - 445
Target Start/End: Original strand, 35526297 - 35526611
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac-gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatc 230  Q
    |||||||||||| || ||||||||||||||| ||||| | ||||||||||||| | ||  | | |  ||||||  || ||||||| ||| | || ||||     
T  35526297 ttttttatcaaagcaataaaatataaaagacagagaggcctgaaccaatacaatagagatacatagagtaaaacttatgaaaagagaaaccagagctatt 35526396  T
Q  231 ccaagaa-ggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctacaa 329  Q
    ||||||| ||||||| ||||| |||| |||||||||| || | ||||||||| ||||| |||||| || |||| ||| ||||||| |||||  |||| ||    
T  35526397 ccaagaaaggaaatggcctaatgaaacaggtgtcaaaaacaaccattgtacataaaac-tagtcaaattatgaccatgtttggcccaacaatagctaaaa 35526495  T
Q  330 gactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttaga 429  Q
    || | |||||||| |||||||||||||||||||||| | |||||||  ||||||  || ||||| ||||| |||| |  ||||||||||||  ||||       
T  35526496 gattgcactctctatgaaaatttgaacaaaagtattaacattcccagatattctattgcaattgcaccaattattttgaatctgccaagacgtctttgtt 35526595  T
Q  430 ggtacccttttgggca 445  Q
    ||||||||||||||||    
T  35526596 ggtacccttttgggca 35526611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 148 - 441
Target Start/End: Complemental strand, 29347167 - 29346872
Alignment:
Q  148 taaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaagaag-gaaatg 244  Q
    |||||||||||||||  ||||| | ||||||||||||||| ||  | | |  |||||| ||| ||||||| ||| ||| |||||||||||||  |||| |    
T  29347167 taaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaaag 29347068  T
Q  245 tcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctacaagactacactctcttt 344  Q
     ||||| ||||||||||||||| || | ||||| ||| ||||| |||||| |  |||| ||||   |||||||||||  ||| |||||| | |||||| |    
T  29347067 gcctaatgaaagaggtgtcaaatacaaccattgaacataaaac-tagtcaaactatgaccattccaggccaaacaacaactaaaagactgccctctctat 29346969  T
Q  345 gaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttagaggtacccttttg 441  Q
    |||||||| |||||||||||||| |||| ||  ||| ||  || ||||| |||||||||||| |||||| |||| |  |||| ||||||| ||||||    
T  29346968 gaaaattttaacaaaagtattgacattctcatctatactcttgcaattggaccaactattatgtatctgtcaaggcggctttggaggtactcttttg 29346872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 18028325 - 18028457
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagacgagaga--cttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    |||||||||||| |||||||||||||||||   ||||  | ||||||||||||||| ||||| ||| |||| || || |||||||||||||  |||||||    
T  18028325 ttttttatcaaagcactaaaatataaaagatatgagatgcctgaaccaatacaacagagtcaaaaagtgtataagctgcgaaaagaaaaattagatctat 18028424  T
Q  230 ccc-aagaaggaaatgtcctaaggaaagaggtg 261  Q
    ||| |  |||||||  ||||||||| |||||||    
T  18028425 ccctataaaggaaagatcctaaggagagaggtg 18028457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 51525216 - 51525109
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    |||||||| ||| ||||||||||||||||||  ||||| | ||| ||||||||||| ||| | ||  ||||||| ||| |||||| |||  |||||||||    
T  51525216 ttttttattaaagcactaaaatataaaagacaggagaggcctgagccaatacaacagagttacaatgtgtaaaacctatgaaaagtaaatccggatctat 51525117  T
Q  230 cccaagaa 237  Q
    ||||||||    
T  51525116 cccaagaa 51525109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 362
Target Start/End: Original strand, 49106841 - 49107005
Alignment:
Q  200 aaaatctacgaaaagaaaaatcggatctatcccaag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtc-atat 297  Q
    |||| ||| ||||||| ||| ||||||||||||||| |||| ||||||||||| ||  ||||||||||||| | || || ||| ||||  ||||| | |     
T  49106841 aaaacctatgaaaagagaaaccggatctatcccaagaaagggaatgtcctaagaaacaaggtgtcaaagacaaccaatgaacataaaaattagtcaaaag 49106940  T
Q  298 aatgaacatttttggccaaacaactgctacaagactacactctctttgaaaatttgaacaaaagt 362  Q
     |||| |||| |||| | ||||||  ||| |||||||| |||||| |||||||||| ||| ||||    
T  49106941 tatgaccattcttggtctaacaacgactaaaagactactctctctatgaaaatttgcacagaagt 49107005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 21844695 - 21844725
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac 162  Q
    |||||||||||||||||||||||||||||||    
T  21844695 ttttttatcaaaacactaaaatataaaagac 21844725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 139 - 446
Target Start/End: Complemental strand, 25168221 - 25167912
Alignment:
Q  139 tcaaaacactaaaatataaaag-acgagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaagaa 237  Q
    ||||| || ||||||||||||| | ||||| | ||||||||||||||| ||||| | | ||||||| ||| ||||||| |||    ||||||||||| ||    
T  25168221 tcaaagcagtaaaatataaaagtaggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaactaaatctatcccaataa 25168122  T
Q  238 -ggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatata-atgaacatttttggccaaacaactgctacaagactac 335  Q
     || ||||| | |||||| |||||||||||| | | || || ||| ||||| |||||| |   |||| |||  |||||||||||||  ||| ||||||||    
T  25168121 agggaatgttcaaaggaacgaggtgtcaaaggcaaccaatgaacaaaaaac-tagtcaaaagtatgaccatacttggccaaacaacgactaaaagactac 25168023  T
Q  336 actctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttagaggtacc 435  Q
     || ||| ||||||||||||||||||||||| ||||||||  ||||||  || |||||||||||||||| | |||||| |||| |  |||| ||||||||    
T  25168022 tctttctatgaaaatttgaacaaaagtattggtattcccatatattctgttgcaattgaaccaactattctgtatctgtcaaggcggctttggaggtacc 25167923  T
Q  436 cttttgggcat 446  Q
    |||||||||||    
T  25167922 cttttgggcat 25167912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 438
Target Start/End: Complemental strand, 3949720 - 3949411
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaag-acgagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatc 230  Q
    |||||||||||| || ||||||||||||| | |||||   ||||||||||||||| || || | | ||||||| ||| ||||||| ||| ||||||||||    
T  3949720 ttttttatcaaagcaataaaatataaaagcatgagaggtctgaaccaatacaacagagacacatagtgtaaaacctatgaaaagagaaaccggatctatc 3949621  T
Q  231 ccaag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtc-atataatgaacatttttggccaaacaactgctaca 328  Q
    | ||| |||| |||| ||||||||| |||||||||||||| |  | |  |||||||| |||||| | |  |||| |||| ||||||||| |||  ||  |    
T  3949620 ctaagaaagggaatgacctaaggaacgaggtgtcaaagacaactaataaacagaaaagctagtcaaaagtatgaccattcttggccaaataacgactgaa 3949521  T
Q  329 agactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttag 428  Q
    ||||||| | ||||  |||||||||||||||||||||| ||||| ||  ||||||  || ||||||| |||||||| |  ||||| |||| |  |||| |    
T  3949520 agactactccctctaagaaaatttgaacaaaagtattggtattctcagatattctgttgcaattgaatcaactattctgcatctgtcaaggcggctttgg 3949421  T
Q  429 aggtaccctt 438  Q
    ||||||||||    
T  3949420 aggtaccctt 3949411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 5605437 - 5605559
Alignment:
Q  163 gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaagaa-ggaaatgtcctaaggaaagaggtg 261  Q
    ||||| ||||| ||||||||||| ||||| ||  ||||||| ||| |||||||||| |||| | ||||| ||||| ||||| | ||||| ||||||||||    
T  5605437 gagaggcttgagccaatacaacagagtcacaatgtgtaaaacctatgaaaagaaaagtcgggtatatccaaagaaaggaaaggccctaaagaaagaggtg 5605536  T
Q  262 tcaaagaccatcattgtacagaa 284  Q
    ||||||||||  |||||||||||    
T  5605537 tcaaagaccactattgtacagaa 5605559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 441
Target Start/End: Original strand, 4263181 - 4263415
Alignment:
Q  209 gaaaagaaaaatcggatctatcccaag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatt 307  Q
    ||||||||||||| || ||| ||| || ||||||| |||||||||||||||||| |  |  ||| | ||||||| |||| |||| || || |||| ||||    
T  4263181 gaaaagaaaaatcagagctacccctagcaaggaaaggtcctaaggaaagaggtggcttaatccaaccttgtacataaaagctagacagattatgaccatt 4263280  T
Q  308 tttggcca-aacaactgctacaagactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattat 406  Q
      || ||| ||||||| |||||| ||||| ||||||   |||  ||| ||||||| ||| |||||||     ||||| ||| ||||||||||||||||      
T  4263281 catgaccataacaactactacaatactaccctctctgataaagattgtacaaaagcattaatattccttgcaattctaatgcaattgaaccaactattcc 4263380  T
Q  407 atatctgccaagacaactttagaggtacccttttg 441  Q
     ||||||||||||||| ||| |||| |||||||||    
T  4263381 gtatctgccaagacaattttggaggaacccttttg 4263415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 269
Target Start/End: Original strand, 2606605 - 2606744
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagacg-agagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatc 230  Q
    |||||||||||| || |||||||||||||  | |||  | |||||||||||| || ||||| ||| || |||| ||| ||||||| |||  |||||||||    
T  2606605 ttttttatcaaagcagtaaaatataaaagctggagaagcctgaaccaatacatcagagtcacaaagtgaaaaacctatgaaaagagaaactggatctatc 2606704  T
Q  231 ccaag-aaggaaatgtcctaaggaaagaggtgtcaaagac 269  Q
    | ||| |||| ||| ||||||||||  |||||||||||||    
T  2606705 ctaagaaagggaatatcctaaggaacaaggtgtcaaagac 2606744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 10990379 - 10990217
Alignment:
Q  127 tatacttttttatcaaaacactaaaatataaaagacgagagactt--gaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcgga 224  Q
    |||| ||||| ||||||  |||||||||| ||||||| ||||  |  ||||||||||| || ||||| ||  || | || ||| |||||||||||||||     
T  10990379 tatagtttttgatcaaagtactaaaatattaaagacgggagaggtctgaaccaatacagcagagtcacaatgtgaacaacctatgaaaagaaaaatcggg 10990280  T
Q  225 tctatcccaagaaggaaatgtcct-aaggaaagaggtgtcaaagaccatcattgtacagaaaa 286  Q
    | |||||| |||| | || ||| | ||| ||||||||||||||||||| |||  |||||||||    
T  10990279 tatatccctagaaaggaaagtctttaagaaaagaggtgtcaaagaccaccatgatacagaaaa 10990217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 442
Target Start/End: Complemental strand, 14344372 - 14344128
Alignment:
Q  197 tgtaaaatctacgaaaagaaaaatcggatctatcccaagaa-ggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcat 295  Q
    |||||||| || |||||||||||||||||||||||||| || || |||||| ||||||| |||||||||||||| | |  || |||||||| ||| |||     
T  14344372 tgtaaaatttatgaaaagaaaaatcggatctatcccaaaaaagggaatgtcataaggaacgaggtgtcaaagacaacccatgaacagaaaaactaatcaa 14344273  T
Q  296 ataatgaacatttttggccaaacaactgctacaagactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaa 395  Q
    |  | || |||| |||||||||||||  ||| ||||| || ||||||   |||| |||||||||||||||||||||||||  |||| |  || ||||| |    
T  14344272 aatacgaccattcttggccaaacaacgactaaaagaccactctctctaaaaaaaattgaacaaaagtattgatattcccagatattttattgcaattg-a 14344174  T
Q  396 ccaactattatatatctgccaagacaactttagaggtacccttttgg 442  Q
    ||||||| ||| |||||| |||| | ||||| |||||||||||||||    
T  14344173 ccaacta-tatgtatctgtcaagtcgactttggaggtacccttttgg 14344128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 198 - 404
Target Start/End: Original strand, 13061765 - 13061971
Alignment:
Q  198 gtaaaatctacgaaaagaaaaatcggatctatcccaagaag-gaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcata 296  Q
    |||||| ||| ||||||| ||| ||  |||||||||||||  |||| | ||||| ||||||||||||||| || | ||||| ||||||||| |||||| |    
T  13061765 gtaaaacctatgaaaagagaaaccgagtctatcccaagaaatgaaaaggcctaatgaaagaggtgtcaaatacaaccattgaacagaaaac-tagtcaaa 13061863  T
Q  297 taatgaacatttttggccaaacaactgctacaagactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaac 396  Q
      | || |||| | ||||||||||| |||| |||||||| |||||| |||||||||||||||||||||| | |||||||  ||| ||| || ||||| ||    
T  13061864 ctacgaccattctaggccaaacaacagctaaaagactaccctctctatgaaaatttgaacaaaagtattaacattcccatctatacttttgcaattggac 13061963  T
Q  397 caactatt 404  Q
    ||| ||||    
T  13061964 caattatt 13061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 375
Target Start/End: Original strand, 44163496 - 44163741
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaag-acgagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatc 230  Q
    ||||||||||||| | |||||||| |||| | ||||| | ||||||||||||||| ||||| | | ||||||| ||| ||||||| ||| ||||||||||    
T  44163496 ttttttatcaaaataataaaatattaaagcaggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatc 44163595  T
Q  231 ccaag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtc-atataatgaacatttttggccaaacaactgctaca 328  Q
    ||||| |||| |||| ||| ||||| || |||||||||||  |||  | ||| |||| |||||| | |  |||| |||| |||||||||||||  ||| |    
T  44163596 ccaagaaaggtaatgccctgaggaacgatgtgtcaaagacagtcaaagaacataaaaactagtctaaagtatgaccattcttggccaaacaacgacta-a 44163694  T
Q  329 agactacactctctttgaaaatttgaacaaaagtattgatattccca 375  Q
    | ||||| ||||||  |||||| ||| ||||||||||| ||||||||    
T  44163695 aaactactctctctaagaaaatatgatcaaaagtattggtattccca 44163741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 283
Target Start/End: Original strand, 41034780 - 41034933
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    |||||||||||| ||||||||||||||||||  |||||   |||||||||||| || ||||| ||  || |||| ||| ||||||||||| | |||||||    
T  41034780 ttttttatcaaagcactaaaatataaaagacaggagaggtctgaaccaatacaccagagtcacaatgtgaaaaacctatgaaaagaaaaacccgatctat 41034879  T
Q  230 cccaag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacaga 283  Q
    | |||| ||||||| | || ||||||| ||||||||||||||| ||| |||||||    
T  41034880 cacaagaaaggaaaagacccaaggaaa-aggtgtcaaagaccaccatagtacaga 41034933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 41034940 - 41034994
Alignment:
Q  316 aacaactgctacaagactacactctctttgaaaatttgaacaaaagtattgatat 370  Q
    |||||||||||||| ||||| |||||  ||||||||||||||||||| |||||||    
T  41034940 aacaactgctacaaaactaccctctcgatgaaaatttgaacaaaagtgttgatat 41034994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 49491874 - 49491930
Alignment:
Q  389 aattgaaccaactattatatatctgccaagacaactttagaggtacccttttgggca 445  Q
    ||||||||||||||||   |||  |||||| ||||||| ||||||||||||||||||    
T  49491874 aattgaaccaactattcggtatacgccaaggcaactttggaggtacccttttgggca 49491930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 283
Target Start/End: Original strand, 27786548 - 27786701
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    |||||||||||| ||||||||||||||| ||  ||||| | ||||||||||||||||||||| ||  ||||| | ||| |||||||||| ||||||||||    
T  27786548 ttttttatcaaagcactaaaatataaaatacaggagaggcctgaaccaatacaacaaagtcacaatgtgtaagacctatgaaaagaaaagtcggatctat 27786647  T
Q  230 cccaag-aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacaga 283  Q
    |||||| ||||||| | |||||||||| |||||||| | |||| ||| |||||||    
T  27786648 cccaagaaaggaaaagacctaaggaaa-aggtgtcacacaccaccatagtacaga 27786701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 442
Target Start/End: Original strand, 28225556 - 28225760
Alignment:
Q  239 gaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggcca-aacaactgctacaagactacac 337  Q
    |||| |||||||||||||||||| | ||  | | ||| |||||||||| |||| || || |||| |||| ||||| | ||||| |||||||||||||| |    
T  28225556 gaaaggtcctaaggaaagaggtgactaattctaccatggtacagaaaagctaggcagattatgaccattcttggcaataacaattgctacaagactaccc 28225655  T
Q  338 tctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaagacaactttagaggtaccct 437  Q
    ||||| ||||| |||| || ||| |||||||||||| |   || |||  |  ||||||||||||||| ||||  |||||||| | |||| |||||| |||    
T  28225656 tctctatgaaagtttgtactaaattattgatattcctagccatgctttagcgattgaaccaactattttatagttgccaagatagcttttgaggtatcct 28225755  T
Q  438 tttgg 442  Q
    |||||    
T  28225756 tttgg 28225760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 418
Target Start/End: Complemental strand, 29369305 - 29369200
Alignment:
Q  313 ccaaacaactgctacaagactacactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatct 412  Q
    ||||||||  |||| |||||||| |||||| |||||||||||||||||| ||||| |||| |   |||||| ||| ||||| |||||||||| | |||||    
T  29369305 ccaaacaatagctaaaagactaccctctctatgaaaatttgaacaaaagcattgacattctcggatattctaatgcaattggaccaactattctgtatct 29369206  T
Q  413 gccaag 418  Q
    ||||||    
T  29369205 gccaag 29369200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 3072279 - 3072377
Alignment:
Q  136 ttatcaaaacactaaaatataaaagacgagaga--cttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatccc 232  Q
    |||||||| ||||||||||||||||||  ||||  | |||||||||||||||||||||  || |||| || || ||||||| |||||  ||||||||||    
T  3072279 ttatcaaagcactaaaatataaaagacaggagatgcctgaaccaatacaacaaagtcagtaagtgtataacctgcgaaaaggaaaattagatctatccc 3072377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 331
Target Start/End: Complemental strand, 3801281 - 3801149
Alignment:
Q  199 taaaatctacgaaaagaaaaatcggatctatcccaagaa-ggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatat 297  Q
    ||||| ||| ||||||| ||| ||||||||||| ||||| || || | |||||||||||||||||||||||| | | |  |||| |||| || |||| ||    
T  3801281 taaaacctatgaaaagagaaaccggatctatcctaagaaaggcaaggacctaaggaaagaggtgtcaaagacaaccgtattacataaaa-ctggtcaaat 3801183  T
Q  298 aatgaacatttttggccaaacaactgctacaaga 331  Q
     |||| |||| ||||||||||||| |||| ||||    
T  3801182 tatgaccattcttggccaaacaacagctaaaaga 3801149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 14295239 - 14295300
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtca 191  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||||||||| || |||||    
T  14295239 ttttttatcaaagcactaaaatataaaagacaggagaggcctgaaccaatacagcacagtca 14295300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 399505 - 399560
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaaca 185  Q
    |||||||||||| ||||||||||||||||||  ||||  | |||||||||||||||    
T  399505 ttttttatcaaatcactaaaatataaaagacaggagatgcctgaaccaatacaaca 399560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 13885884 - 13885936
Alignment:
Q  316 aacaactgctacaagactacactctctttgaaaatttgaacaaaagtattgat 368  Q
    |||||||| ||||| |||| ||||||| ||| ||||||||||||||| |||||    
T  13885884 aacaactgttacaaaactatactctctatgacaatttgaacaaaagtgttgat 13885936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 417
Target Start/End: Complemental strand, 34548259 - 34547978
Alignment:
Q  138 atcaaaacactaaaatataaaag-acgagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaag- 235  Q
    |||||| || ||||||||||||| | |||||   |||||||||||| || |||||   | || |||||||| ||||||| |||||||||||||||||||     
T  34548259 atcaaagcagtaaaatataaaagtaggagaggtctgaaccaatacatcagagtcacttagtgaaaaatctatgaaaagagaaatcggatctatcccaaga 34548160  T
Q  236 aaggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtc-atataatgaacatttttggccaaacaactgctacaagacta 334  Q
    |||| ||||||||||||||  ||||||||||||  | || |  ||| ||||  ||||| | |  |||| |||| |||||| ||||||  ||| |||||||    
T  34548159 aagggaatgtcctaaggaacaaggtgtcaaagataaccaat-aacataaaaattagtcaaaagtatgaccattcttggcctaacaacgactaaaagacta 34548061  T
Q  335 cactctctttgaaaatttgaacaaaagtattgatattcccaattattcttatgtaattgaaccaactattatatatctgccaa 417  Q
    | |||||| |||||||||| |||||||||||| ||||| ||  ||||||  || | |||||||||||||| | |||| |||||    
T  34548060 ctctctctatgaaaatttgcacaaaagtattggtattctcagatattctgttgcacttgaaccaactattctgtatcggccaa 34547978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 307
Target Start/End: Original strand, 29132183 - 29132361
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagacg--agagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    |||||||||||| || ||| |||||||||||   |||||| ||||||||||||  | |||||  || |||||||  || ||||||||||| || ||||||    
T  29132183 ttttttatcaaagcaataacatataaaagacagaagagacatgaaccaatacagtagagtcacgaagtgtaaaacttatgaaaagaaaaaccgaatctat 29132282  T
Q  230 cccaagaa-ggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatt 307  Q
    |||||||| ||||| || ||||  ||||||||||||||||| | ||||||||| |||| ||||||| || |||| ||||    
T  29132283 cccaagaaaggaaaagttctaaaaaaagaggtgtcaaagacgaccattgtacataaaaactagtcaaattatgaccatt 29132361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 372
Target Start/End: Original strand, 7543857 - 7544081
Alignment:
Q  148 taaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaagaag-gaaatg 244  Q
    |||||||||||||||  ||||| | ||||||||||||||| ||  | | |  |||||| ||| ||||||| ||| ||| |||||||||||||  |||| |    
T  7543857 taaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagg 7543956  T
Q  245 tcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctacaagactacactctcttt 344  Q
     ||||| | ||||||||||||| ||   || || ||||||||| |||||| |  |||| |||| | ||||||||||| |||| |||||| | |||| |      
T  7543957 gcctaatgtaagaggtgtcaaatacagccactgaacagaaaac-tagtcaaactatgaccattctaggccaaacaacagctaaaagactgccctctat-- 7544053  T
Q  345 gaaaatttgaacaaaagtattgatattc 372  Q
    ||||||||||||||||||||||| ||||    
T  7544054 gaaaatttgaacaaaagtattgacattc 7544081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 16099906 - 16099789
Alignment:
Q  171 tgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctatcccaag-aaggaaatgtcctaaggaaagaggtgtcaaagac 269  Q
    |||||||||||| || ||||||| ||||||||| ||| | ||||| ||| |||||||||||| || |||| || || |||||||| |||||| |||||||    
T  16099906 tgaaccaatacatcagagtcatataatgtaaaacctatggaaagagaaaccggatctatcccgagaaagggaaagttctaaggaacgaggtgacaaagac 16099807  T
Q  270 catcattgtacagaaaac 287  Q
     | || |||||| |||||    
T  16099806 aaccaatgtacaaaaaac 16099789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 334
Target Start/End: Original strand, 19407629 - 19407832
Alignment:
Q  132 ttttttatcaaaacactaaaatataaaagac--gagagacttgaaccaatacaacaaagtcataaaatgtaaaatctacgaaaagaaaaatcggatctat 229  Q
    ||||||||||||  | |||||||||||||||  ||||| | ||||||||||||||| ||  | | | ||||||| ||| ||||||| ||| ||| | |||    
T  19407629 ttttttatcaaagtaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagtgtaaaacctatgaaaagagaaaccgggtttat 19407728  T
Q  230 cccaagaa-ggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaacctagtcatataatgaacatttttggccaaacaactgctaca 328  Q
    || || || ||||| | ||| | |||| ||||||||||||| | ||||| ||||||||| |||| | || | || |||| ||||||||||||| |||| |    
T  19407729 ccgaaaaaaggaaaggccctgatgaaacaggtgtcaaagacaaccattgaacagaaaac-tagttagatta-gaccattcttggccaaacaacagctaaa 19407826  T
Q  329 agacta 334  Q
    ||||||    
T  19407827 agacta 19407832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 26180407 - 26180318
Alignment:
Q  198 gtaaaatctacgaaaagaaaaatcggatctatcccaagaa-ggaaatgtcctaaggaaagaggtgtcaaagaccatcattgtacagaaaa 286  Q
    ||||||| ||||||||||||||  |||||||||| || || ||||| ||||| || |||||| |||||||||||| |||| ||| |||||    
T  26180407 gtaaaatatacgaaaagaaaaactggatctatcctaaaaaaggaaaagtcctgagaaaagagatgtcaaagaccaccattatacggaaaa 26180318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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