View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_high_4 (Length: 408)
Name: NF8569_high_4
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 31942854 - 31942475
Alignment:
| Q |
18 |
tcaagtgaatctgggtccaatgtccgtgcaactgataagaaaggggttaaagaaaaatcaactcaaattaaagaatctaataggcgtgagtggactttac |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31942854 |
tcaagtgaatctgggtccaatgtccatgcaactgataagaaaggggttaaagaaaaatcaactcaaattaaagaatctaataggcgcgagtggactttac |
31942755 |
T |
|
| Q |
118 |
tggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31942754 |
tggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgcat |
31942655 |
T |
|
| Q |
218 |
aatgtttctaaggttcattctaactttgctggtagataatatttttactgattttataatcttggttgtttttgacttgaagagatgggctgtggatata |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31942654 |
aatgtttctaaggttcattttaactttgctggtagataatatttttactgattttataatcttggttgtttttgacttgaagagatgggctgtggatata |
31942555 |
T |
|
| Q |
318 |
aataaatatgcttgtgagagtctaaagctgaatcacccagaaacacacgtatgttttggtgttattctatacttgatgtc |
397 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
31942554 |
aataaacatgcttgtgagagtctaaagctgaatcacccagaaacacatgtatgttttggtgttattctatacctgatgtc |
31942475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 13539620 - 13539523
Alignment:
| Q |
105 |
gagtggactttactggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatt |
202 |
Q |
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| T |
13539620 |
gagtggagtttattggatttgtatgccggttgtggagctatgtccacgggacttttctttggagcttttaaatctggcattaaacttgtcacggtatt |
13539523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 9393224 - 9392845
Alignment:
| Q |
18 |
tcaagtgaatctgggtccaatgtccgtgcaactgataagaaaggggttaaagaaaaatcaactcaaattaaagaatctaataggcgtgagtggactttac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
9393224 |
tcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaaagtcaacacaaattaaagaatctaataggcctgagtggactttac |
9393125 |
T |
|
| Q |
118 |
tggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9393124 |
tggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgcat |
9393025 |
T |
|
| Q |
218 |
aatgtttctaaggttcattctaactttgctggtagataatatttttactgattttataatcttggttgtttttgacttgaagagatgggctgtggatata |
317 |
Q |
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||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9393024 |
aatgtttctttggttcattttaactttgctggtaaataatatttttactgattgtataatcttggttgtttttgacttgaagaaatgggctgtggatata |
9392925 |
T |
|
| Q |
318 |
aataaatatgcttgtgagagtctaaagctgaatcacccagaaacacacgtatgttttggtgttattctatacttgatgtc |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
9392924 |
aataaatatgcttgtgagagtctaaagctgaatcacccagaaacatacgtatgttttggtgttattctgtacttaatgtc |
9392845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 1341051 - 1340688
Alignment:
| Q |
18 |
tcaagtgaatctgggtccaatgtccgtgcaactgataagaaaggggttaaagaaaaatcaactcaaattaaagaatctaataggcgtgagtggactttac |
117 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||||| || | ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
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| T |
1341051 |
tcaagtgaatctgggtacaatgtccatgcagctgataaaaatgcggttaaagaaaaatcaagtcaaattaaagaatgtaataggcctgagtggactttac |
1340952 |
T |
|
| Q |
118 |
tggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgcat |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1340951 |
tggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcatctatttctggcattaagcttgtcacggtatttagactaatttgcat |
1340852 |
T |
|
| Q |
218 |
aatgtttctaaggttcattctaactttgctggtagataatatttttactgattttataatcttggttgtttttgacttgaagagatgggctgtggatata |
317 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||| | ||||| |||||| |||||||||| |||||||||||||| ||||||||||| ||||||||| |
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| T |
1340851 |
aatgtttctttggttcattttaactttgcttgtacagaatatctttactaattttataat----gttgtttttgacttcaagagatgggccgtggatata |
1340756 |
T |
|
| Q |
318 |
aataaatatgcttgtgagagtctaaagctgaatcacccagaaacacacgtatgttttggtgttattct |
385 |
Q |
| |
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||| | |||| ||||||||||| ||||||||||| |||||||| || ||| |||||||||||||||| |
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| T |
1340755 |
aatgaccatgcatgtgagagtctcaagctgaatcatccagaaactcatgtacgttttggtgttattct |
1340688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 5643098 - 5642727
Alignment:
| Q |
17 |
atcaagtgaatctgggtccaatgtccgtgcaactgataagaaaggggttaaagaaaaatcaactcaaattaaagaatctaataggcgtgagtggacttta |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| || | || | ||||| || || |||||||||||||| |||| |||||||||||| |
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| T |
5643098 |
atcaagtgaatctgggtccaatgcatgtgcaactgataataatgtggctgaagaaggattgtctaaaattaaagaatctgataga---gagtggacttta |
5643002 |
T |
|
| Q |
117 |
ctggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgca |
216 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |||||||||||| ||||||||||| ||| |||||| |
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| T |
5643001 |
ttagatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattgctgacattaagcttgtgacggtatttaggctattttgca |
5642902 |
T |
|
| Q |
217 |
taatgtttctaaggttcattctaactttgctggtagataatatttttactgattttataatcttggttgtttttgac-ttgaagagatgggctgtggata |
315 |
Q |
| |
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|||||||||| |||||||| |||| ||||| ||| | || ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| |
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| T |
5642901 |
taatgtttctttggttcattgtaacattgcttgta-aggatttttttactgattttataat----gttgtttttgactttgaagaggtgggctgtggata |
5642807 |
T |
|
| Q |
316 |
taaataaatatgcttgtgagagtctaaagctgaatcacccagaaacacacgtatgttttggtgttattctatacttgatg |
395 |
Q |
| |
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|||| ||||||| ||||||||||| ||||||||||| || ||||| || ||||||||||||||||| || || |||||| |
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| T |
5642806 |
caaatgaatatgcatgtgagagtcttaagctgaatcatcccgaaactcaagtatgttttggtgttatcctgtagttgatg |
5642727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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