View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_high_5 (Length: 399)
Name: NF8569_high_5
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 2469148 - 2469512
Alignment:
| Q |
17 |
acttagaataatgaaattggataattaaaagtcttcacagagcaagctagccaacaatatcactagacttagacttcaatggttttcttctcatacattc |
116 |
Q |
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| T |
2469148 |
acttagaataatgaaattggataattaaaagtcttcacagagcaagctagccaacaatatcactagactt------caatggttttcttctcatacattc |
2469241 |
T |
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| Q |
117 |
tgaaatttactcaatgtgatgcatttgtacaaaactcttcaggcttatattgtgtctagaggtcaacatcatgaatgataataannnnnnnnagaggaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2469242 |
tgaaatttactcaatgtgatgcatttgtacaaaactcttcaggcttatattgtgtctagaggtcaacatcatgaatgataataattttttttagaggaaa |
2469341 |
T |
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| Q |
217 |
tgataatcattttgtgcaacctatttatttttattattcaagaatcttcaaatcaataatatcaattaatttgcttgtttttggcagggcaatgactgtc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2469342 |
tgataatcattttgtgcaacctatttatttttattattcaagaatcttcaaatcaataatatcaattaatttgcttgtttttggcagggcaatgactgtc |
2469441 |
T |
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| Q |
317 |
atatctgtcgctctaggtcgaacttttcattatgttgacgaactcttgccgttcaggtttttccttattct |
387 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2469442 |
atttctgtcgctctaggtcgaacttttcattatgtcgacgaactcttgccgttcaggtttttccttattct |
2469512 |
T |
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