View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8569_high_9 (Length: 304)
Name: NF8569_high_9
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 3565998 - 3566271
Alignment:
| Q |
18 |
actagcacgtagggttcctttgtcgatgcaacacaagaccataatgaagaagatgaggatgaaaagtagattacacaacctttgtccactcctgacatag |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
3565998 |
actagcacgtaaggttcctttgtcgatgcaacacaagaccataatgaagaagatgaggatgaagagcagattacacaacctttgtccactcctgacatag |
3566097 |
T |
|
| Q |
118 |
tccagaaggatatagactttcttaaaaactcatgggccaacattgtggaaaataaagatgcagatacacgttttttacaaaccttagaaaagttcctgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3566098 |
tccagaaggatatagactttcttaaaaactcatgggccaacattgtggaaaataaagatgcagatacacgttttttacaaaccttagaaaagttcctgta |
3566197 |
T |
|
| Q |
218 |
gcaaacaccttacaagtcattgatagtgatggttttcagatgaaagtatcaaaacaccaaaagaaagctcagaa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3566198 |
gcaaacaccttacaagtcattgatagtgatggttttcatatgaaagtatcaaaacaccaaaagaaagctcagaa |
3566271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University