View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_11 (Length: 403)
Name: NF8569_low_11
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 42960348 - 42960720
Alignment:
| Q |
18 |
catggattagcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttcttcacaaaagctttaatggattctgctgatc |
117 |
Q |
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| T |
42960348 |
catggattagcaacttttgataagatgaatcctcccttaaatgcttcaattggaatgtcttttttgttcttcacaaaagctttaatggattctgctgatc |
42960447 |
T |
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| Q |
118 |
tttgtttaggtgggattgttgagagctgcccaatctggtttatcatgaaaggaaaa-tcacttctatgcatgttacttgttagtttctattttactattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||| |
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| T |
42960448 |
tttgtttaggtgggattgttgagagctgcccaatctggtttatcatgaaatgaaaaattacttctatgcatattacttgttagtttctattttactattc |
42960547 |
T |
|
| Q |
217 |
aatgctcgtatagacattgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgcggttaattgtgttcggtgaatggttaaagag |
316 |
Q |
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| T |
42960548 |
aatgctcgtatagacgttgcacgccttgttgattgtgctcggtaaatggttaatgacttccagcatcgtggttaattgtgttcggtaaatggttaatgag |
42960647 |
T |
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| Q |
317 |
ttgcgacatcttgtaatattcattaattaacc----atatactaaacttgattagccgcatatttgaactatg |
385 |
Q |
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| T |
42960648 |
ttgcgacatcttgtaatattcattaattaaccatatatatactaaacttgattagccgcatatttgaactatg |
42960720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 29246407 - 29246463
Alignment:
| Q |
286 |
ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa |
342 |
Q |
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| T |
29246407 |
ggttaattatgttcagtgtatggttaatgagttgcgacaccttgttatattcattaa |
29246463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 343
Target Start/End: Complemental strand, 8309561 - 8309504
Alignment:
| Q |
284 |
gcggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaat |
343 |
Q |
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| T |
8309561 |
gcggttaattgtgctcggtgaatggttagtgagttgcgatatcttgt--tattcattaat |
8309504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 40829662 - 40829719
Alignment:
| Q |
286 |
ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaat |
343 |
Q |
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| T |
40829662 |
ggttaattgtgctcagtggatggttaatgagttgctacaccttgttatattcattaat |
40829719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 20668294 - 20668350
Alignment:
| Q |
286 |
ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa |
342 |
Q |
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||||||||||| || | ||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
20668294 |
ggttaattgtgatcattaaatggttaatgagttgcgacaccttgtcatattcattaa |
20668350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 52910094 - 52910150
Alignment:
| Q |
286 |
ggttaattgtgttcggtgaatggttaaagagttgcgacatcttgtaatattcattaa |
342 |
Q |
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|||||||| | ||| ||| |||| ||| |||||| |||||||||||||||||||||| |
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| T |
52910094 |
ggttaattatattctgtggatggataaggagttgtgacatcttgtaatattcattaa |
52910150 |
T |
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