View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_13 (Length: 373)
Name: NF8569_low_13
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 25035687 - 25035315
Alignment:
| Q |
14 |
gacatcaatttcagctaacaagtgattgatcaatgatcaaacgaaacatatccaattttttgttttagtaagataagtttatacatatgatataatctgc |
113 |
Q |
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| T |
25035687 |
gacatcaatttcagctaacaagtgattgatcaatgatcaaatgaaacatatccaattttttgttttagtaagataagtttatacatatgatataatctgc |
25035588 |
T |
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| Q |
114 |
aggttttgtttatagtttttgtattgaattatt---gatcaccttctt-----------atgtacctcgcataatggaattaggtagattaatgaataga |
199 |
Q |
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| T |
25035587 |
aggttttgtttatagtttttgtattgaattattattgatcacctttttgaattgagggtatgtacctcgcataatggaattaggtagattaatgaataga |
25035488 |
T |
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| Q |
200 |
acatatatccagacttgtatatgatcatagcaccgacacctcggattgaaggagtgtttggtatccggcacgtgtcagtgaccgacattagcacaattgg |
299 |
Q |
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| T |
25035487 |
acatatatccagacttgtatacgatcatagcaccgacacctcggattgaaggagtgtttggtatccggcacgtgtcagtgatcgacattaacacaattgg |
25035388 |
T |
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| Q |
300 |
ttacattgagtcact----------tatattattatagatatgttttagtattggtgtcgagtctgatgtcca |
362 |
Q |
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| T |
25035387 |
ttacattgagtcacttataatttcttatattattatagatatgtttcggtatctgtgtcgagtctgatgtcca |
25035315 |
T |
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