View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_15 (Length: 329)
Name: NF8569_low_15
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 39628038 - 39628334
Alignment:
| Q |
19 |
ttcttgactctacattgtcaataaatacaactttatgtaggagtggcgcaaaggtttattttgtgtgtttgttttttgcttgcatttctggaaagtatta |
118 |
Q |
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| T |
39628038 |
ttcttgactctacattgtcaataaatacaactttatgtaggagtggcgcaaaggtttatctt-tgtgtttgttttttgcttgcatttctggaaagtatta |
39628136 |
T |
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| Q |
119 |
aactactgaaatacgtgaaatattattatcttatagcattgtgaccatacctggagctaggcttgttgatgattttgaaggaatacgtaagtttaatgat |
218 |
Q |
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| T |
39628137 |
aactactgaaataagtgaaatattattatcttatagcattgcgaccatacctggagctaggcttgttgatgattttgaaggaatacgtaagtttaatgac |
39628236 |
T |
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| Q |
219 |
tacacgtatcaattttgattcttttgaattttggatatgctcgcaaaaacttgagtatcagtcaatttttagacaaattgtaatatttataagcatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39628237 |
tacacgtatcaattttgattcttttgaattttggatatgctcgcaaaaacttgagtatcagtcaatttttagacaaattgtaatatttataagcatct |
39628334 |
T |
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