View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_19 (Length: 308)
Name: NF8569_low_19
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 30369053 - 30369124
Alignment:
| Q |
18 |
tgattcgccccaaaggactaatagtatgtgttgatgtttagttattagttggtgttgtacaacataacattc |
89 |
Q |
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| T |
30369053 |
tgattcgccccaaaggactaatagtatgtgttgatgtttagttattagttggtgttgtacaacataacattc |
30369124 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 31382428 - 31382487
Alignment:
| Q |
233 |
atttgatggaagcatttgatatatgtat-ttgtttcctttagcttatttgtaattgtgat |
291 |
Q |
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| T |
31382428 |
atttgatagaagcatttgatatatgtatattatttcctttcgcctatttgtaattgtgat |
31382487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 31375478 - 31375443
Alignment:
| Q |
51 |
atgtttagttattagttggtgttgtacaacataaca |
86 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
31375478 |
atgtttggttattagttggtgttgtacaacataaca |
31375443 |
T |
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