View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_2 (Length: 698)
Name: NF8569_low_2
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 392 - 686
Target Start/End: Original strand, 32016911 - 32017205
Alignment:
| Q |
392 |
ttgaatgttggagtggggaagcgagaggtaagtagatgctgaaagggttttggttagtttggcacgcaattatttgggtgatatggaaagctagaaatgc |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32016911 |
ttgaatgttggagtggggaagcgagaggtaagtagatgcggaaagggttttggttagtttggcacgcaattatttgggtgatatggaaagctagaaatgc |
32017010 |
T |
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| Q |
492 |
aaagatatttgagaatcattcaaaagatgtggaggagatggtggaagagatcaaggtgttgtcttggagatggatgttgatgagattgaaggttttgcct |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32017011 |
aaagatatttgagaatcattcaaaagatgtggaggagatggtggaagagatcaaggtgttgtcttggagatggatgttgatgagattgaaggttttgcct |
32017110 |
T |
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| Q |
592 |
tgcctattttactagtggaattgggatcctgaagattgcttaagaaggtagtatttaaggggggagggtctgtgtttttcgagctgtgctctctg |
686 |
Q |
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| T |
32017111 |
tgcctattttacgagtggaattgggatcctgaagattgcttaagaaggtagtatttaaggggggagggtctgtgtttttcgagctgtgctctctg |
32017205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 32016550 - 32016906
Alignment:
| Q |
17 |
ggaagttgagatttgaggatgatggagtcatttcggtaagctcagtgtacaaggtgttggaggggttgttaattttagaggatggtttgaatcctgtgga |
116 |
Q |
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| T |
32016550 |
ggaagttgagatttgaggatgatggagtcatttcggtaagctcaatgtacaaggtgttggaggggttgttaattttagaggatggtttgaatccggtgga |
32016649 |
T |
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| Q |
117 |
ggaaaaggtgtttgattacttttggaaaagcccggccccgtcaaaagttgtggctttttcttg----------cgtgatcggattcctacgggaggaatc |
206 |
Q |
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| T |
32016650 |
ggaagaggtgtttggttacctttggaaaagcccagccccgtcaaaagttgtggctttttcttggaaacttcttcgtaatcggattcctacaggagaaatc |
32016749 |
T |
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| Q |
207 |
ttgccattcagaatttattggacccgaaaagttcgaccaattgtgttttttgcgatgcttaggtagaatcttcaacgcatcttttcttgcattgtagtgt |
306 |
Q |
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| T |
32016750 |
ttgccattcagaatttattggatccgaaaagttcgaccaattgtgttttttgcgatgcttcggtagaatcttcaacacatattttcttgcattgtagtgt |
32016849 |
T |
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| Q |
307 |
tatttctaagaattggaggaaaatcatgggattgactttggagaaaaatcatggatt |
363 |
Q |
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| T |
32016850 |
tatttctaagaattggaggaaaatcatgggattgactttggagaaaaatcatggatt |
32016906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 560
Target Start/End: Original strand, 919392 - 919435
Alignment:
| Q |
517 |
gatgtggaggagatggtggaagagatcaaggtgttgtcttggag |
560 |
Q |
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| T |
919392 |
gatgtggaagagatagtggaggagatcaaggtgttgtcttggag |
919435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 7425062 - 7425105
Alignment:
| Q |
137 |
tttggaaaagcccggccccgtcaaaagttgtggctttttcttgc |
180 |
Q |
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| T |
7425062 |
tttggaagagcccggctcggtcaaaagttgtggctttttcttgc |
7425105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 570
Target Start/End: Original strand, 26397728 - 26397778
Alignment:
| Q |
520 |
gtggaggagatggtggaagagatcaaggtgttgtcttggagatggatgttg |
570 |
Q |
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| T |
26397728 |
gtggatgagatagtggaagagatcaaggtaatgtcttggcgatggatgttg |
26397778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 560
Target Start/End: Complemental strand, 27185643 - 27185603
Alignment:
| Q |
520 |
gtggaggagatggtggaagagatcaaggtgttgtcttggag |
560 |
Q |
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| T |
27185643 |
gtggatgagatagtggaagagatcaaggggttgtcttggag |
27185603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 571
Target Start/End: Original strand, 8453176 - 8453220
Alignment:
| Q |
527 |
agatggtggaagagatcaaggtgttgtcttggagatggatgttga |
571 |
Q |
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| T |
8453176 |
agattgtggaggaggtgaaggtgttgtcttggagatggatgttga |
8453220 |
T |
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