View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8569_low_20 (Length: 305)

Name: NF8569_low_20
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8569_low_20
NF8569_low_20
[»] chr1 (1 HSPs)
chr1 (3-305)||(5129498-5129792)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 305
Target Start/End: Complemental strand, 5129792 - 5129498
Alignment:
Q  3 aatatgactcttgacaggtaccctcctccggtgtgacttttgatgaaagagtacaactgaaatgaagcaacttccatacaataggtagggttatgaaagt 102  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129792 aatatgactcttgacaggtaccctcctccggtgagacttttgatgaaagagtacaactgaaatgaagcaacttccatacaataggtagggttatgaaagt 5129693  T
Q  103 tcttgttttaggatgcaaatgatgtcttttctttttattgtaaaatttaatctctgttcattagtcattatctatggttttcggagaatgacttgctacc 202  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5129692 tcttgttttaggatgaaaatgatgtcttttcttttt-ttgtaaactttaatctctgttcattagtcattatctatggttttcagagaatgacttgctacc 5129594  T
Q  203 ttgttaccttcattaggaaaaacaagacagttctttatcattcagtttcctgatgtcttatatatgcttttcttcatctatcttgtcttcttagtcttta 302  Q
    ||||| ||   | |    ||  |    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129593 ttgttgcc--gagtgcttaatgc---tcagt--tttatcattcagtttcctgatgtcttatatatgcttttcttcatctatcttgtcttcttagtcttta 5129501  T

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