View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8569_low_22 (Length: 287)
Name: NF8569_low_22
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 48402359 - 48402091
Alignment:
| Q |
1 |
gaacataatagcaacatggtgaagagaggcttcattttcgctttcttaatatnnnnnnnnnnnnnnnnnnntgagtactctcaagagattgtgatagcat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48402359 |
gaacagaatagcaacatggtgaagagaggcttcattttcgctttcttaatattgtgtgtgtgtgtgtgtgttgagtactctcaagagattgtgatagcat |
48402260 |
T |
|
| Q |
101 |
tagcaagtaggagcagcgtatttatattgatgaatatctttaaagatggtgccaacttgggaatagtcttaaaaagttggtgaaaataaaataatatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48402259 |
tagcaagtaggagcagcgtatttatattgatgaatatctttaaagatggggccaacttgggaatagtcttaaaaagttggtgaaaataaaataatatgaa |
48402160 |
T |
|
| Q |
201 |
aaggcagaaggatcggtcgaatttaatgtgtgatacaatagaaaataggtggagtcggtgtgttgtagg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48402159 |
aaggcagaaggatcggtcgaatttaatgtgtgatacaatagaaaataggtggagtcggtgtgttgtagg |
48402091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 77 - 267
Target Start/End: Original strand, 6402050 - 6402236
Alignment:
| Q |
77 |
actctcaagagattgtgatagcattagcaagtaggagcagcgtatttatattgatgaatatctttaaagatggtgccaacttgggaatagtcttaaaaag |
176 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
6402050 |
actctcaagagattgtgatagcattaggaagtagcagcagtgtatttatattgattaat--ctttaaagatggtgccaccttgggaa--gtcttaaaaag |
6402145 |
T |
|
| Q |
177 |
ttggtgaaaataaaataatatgaaaaggcagaaggatcggtcgaatttaatgtgtgatacaatagaaaataggtggagtcggtgtgttgta |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6402146 |
ttggtgaaaataaaataatatgaaaaggcagaaggatcggtcgaatttaatgtgtgatacaatagaaaataggtggagtcggtgtgttgta |
6402236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6401978 - 6402032
Alignment:
| Q |
1 |
gaacataatagcaacatggtgaagaga---ggcttcattttcgctttcttaatat |
52 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
6401978 |
gaacagaatagcaacatggtgaagagaggcggcttcattttggctttcttaatat |
6402032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 77 - 267
Target Start/End: Original strand, 31877672 - 31877859
Alignment:
| Q |
77 |
actctcaagagattgtgatagcattagcaagtaggagcagcgtatttatattgatgaatatctttaaagatggtgccaacttgggaatagtcttaaaaag |
176 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
31877672 |
actctcaagagattgtgatagcattaggaagtagcagcagtgtatttatattgatgaat--ctttatagatggtgccaccttgggaa--gtcttaaaaag |
31877767 |
T |
|
| Q |
177 |
ttggtgaaaataaaataatatgaaaa-ggcagaaggatcggtcgaatttaatgtgtgatacaatagaaaataggtggagtcggtgtgttgta |
267 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31877768 |
ttggtgaaaataaaataatatgaaaaaggcagaaggatcggtcgaatttaatgtgtgatacaatagacaataggtggagtcggtgtgttgta |
31877859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University