View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_23 (Length: 280)
Name: NF8569_low_23
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_23 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 23552147 - 23551896
Alignment:
| Q |
16 |
gcaaatacgttactaaatggtcctgttctaaagatctcaactgagtctttccaaataaacatttcaggaataatgctaagtctcatacctgaagtaaaat |
115 |
Q |
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| T |
23552147 |
gcaaatacgttactaaatggtcctgttctgaaaatctcaactgaatctttccaaataaacatttctggaataatgctaagtctcatacctgaagtaaaat |
23552048 |
T |
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| Q |
116 |
tacccgaagacgggtcttcccagtttttccatgcattgaaacccctatttataccacttttcttgtcccaaccaatcttcattcctgctaatattgtatt |
215 |
Q |
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| T |
23552047 |
tacccgaagacgggtcttcccagtttttccatgcattgaaacccctatttataccacttttcttgtcccaaccaatcttcattcctgctaatattgtatt |
23551948 |
T |
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| Q |
216 |
atcaggataatcaaagctctgccacaagaaattctcttcatccctttcatct |
267 |
Q |
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| T |
23551947 |
atcaggataatcaaagctttgccacaagaaattctcttcatccctttcatct |
23551896 |
T |
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Target: scaffold0090 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 10221 - 10290
Alignment:
| Q |
178 |
ttgtcccaaccaatcttcattcctgctaatattgtattatcaggataatcaaagctctgccacaagaaat |
247 |
Q |
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| T |
10221 |
ttgtcccatccagccttcattcctgataatattgtatcacaaggataatcaaaactttgccacaaaaaat |
10290 |
T |
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