View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8569_low_25 (Length: 272)
Name: NF8569_low_25
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_25 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 18163958 - 18164229
Alignment:
| Q |
1 |
gagaggtagagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctctaattatccactttttcaccattcatagacgatctg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18163958 |
gagaggtagagacgccacatctccacccaaaatcttaatacattaggtgtatgagtcacctctctaattatccactttttcaccattcatagacgatgtg |
18164057 |
T |
|
| Q |
101 |
aacttaaccactcacaagtgaaccgagtattttattccaatttttcatttaggttagcagtgatacaatgcatgtgaaaatgaagcaaaacaaccagagc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18164058 |
aacttaaccactcacacgtgaaccgagtattttattccaatttttcatttaggttagcagtgatacaatgcatgtgaaaatgaagcaaaacaaccagagc |
18164157 |
T |
|
| Q |
201 |
tagcaacaagtttgattattatgtagttttgtattgtatctttcattcatttgggtgtgcattcattatgat |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
18164158 |
tagcaacaagtttgattattatgtagttttgtattgtttctttcattcctttgggtgtgcattcattatgat |
18164229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 11200038 - 11199982
Alignment:
| Q |
9 |
gagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctct |
65 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
11200038 |
gagacgccacatctccacccaaaaccttaaggcattaggcatatgagtcacctctct |
11199982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 28296070 - 28296126
Alignment:
| Q |
9 |
gagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctct |
65 |
Q |
| |
|
||||| |||||| ||||||||||| ||||| | ||||||| |||| ||||||||||| |
|
|
| T |
28296070 |
gagacaccacatctccacccaaaaccttaagagattaggtatatgggtcacctctct |
28296126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University