View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8569_low_27 (Length: 267)

Name: NF8569_low_27
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8569_low_27
NF8569_low_27
[»] chr6 (31 HSPs)
chr6 (27-203)||(28185611-28185790)
chr6 (22-200)||(28227190-28227368)
chr6 (22-159)||(28297523-28297660)
chr6 (22-159)||(28514413-28514550)
chr6 (19-209)||(28243041-28243239)
chr6 (22-202)||(28181354-28181534)
chr6 (34-209)||(28325729-28325901)
chr6 (27-187)||(28234808-28234968)
chr6 (27-113)||(27337921-27338007)
chr6 (27-113)||(27398661-27398747)
chr6 (31-127)||(26635939-26636035)
chr6 (31-127)||(26741905-26742001)
chr6 (31-127)||(26959415-26959511)
chr6 (22-105)||(27214660-27214743)
chr6 (22-105)||(27234485-27234568)
chr6 (25-116)||(26617865-26617956)
chr6 (25-116)||(26723793-26723884)
chr6 (46-137)||(28098189-28098280)
chr6 (45-118)||(26937369-26937442)
chr6 (50-127)||(26975320-26975397)
chr6 (27-82)||(26811754-26811809)
chr6 (42-133)||(26861873-26861964)
chr6 (31-117)||(26848909-26848995)
chr6 (27-117)||(28139786-28139876)
chr6 (91-137)||(28150235-28150281)
chr6 (49-111)||(31284555-31284617)
chr6 (27-112)||(26656234-26656319)
chr6 (27-112)||(26762205-26762290)
chr6 (23-112)||(28781380-28781469)
chr6 (23-112)||(28786519-28786608)
chr6 (23-112)||(28792640-28792729)
[»] scaffold0019 (1 HSPs)
scaffold0019 (19-198)||(58053-58232)
[»] scaffold0038 (4 HSPs)
scaffold0038 (22-200)||(27688-27866)
scaffold0038 (19-209)||(43203-43401)
scaffold0038 (34-209)||(117044-117216)
scaffold0038 (27-187)||(34970-35130)
[»] chr2 (2 HSPs)
chr2 (31-118)||(17993535-17993622)
chr2 (46-127)||(3279967-3280048)
[»] chr3 (1 HSPs)
chr3 (204-264)||(4292930-4292990)
[»] chr1 (3 HSPs)
chr1 (21-112)||(28164207-28164298)
chr1 (22-112)||(268201-268291)
chr1 (22-112)||(28127523-28127613)
[»] chr4 (1 HSPs)
chr4 (43-125)||(5090792-5090874)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 28185611 - 28185790
Alignment:
Q  27 gttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatc---ctagg 123  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||    
T  28185611 gttccaaaataacaaggatagcatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctgctggg 28185710  T
Q  124 tacctcacttcacttatgttttacattcttacatatatcacatttctttaattttctattttctaactgtttcatcttac 203  Q
    |||| ||||||||| ||||||||||||||||||||| ||| || |||||||| ||||||| ||| |||||||||||||||    
T  28185711 taccccacttcactcatgttttacattcttacatatgtcatatctctttaatattctattatcttactgtttcatcttac 28185790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 28227190 - 28227368
Alignment:
Q  22 gagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatccta 121  Q
    |||||||||||||||| |||| ||| |||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||  |||||||||    
T  28227190 gagaggttccaaaataacaagcatagcatggataggttgcagaaatggaagatggctcttactcaaactgctaacttctctggccaccaaatcaatccta 28227289  T
Q  122 ggtacctcacttcacttatgttttacattcttacatatatcacatttctttaattttctattttctaactgtttcatct 200  Q
    ||||||  | |||||| ||||||||||||||||||||| ||| | ||||||||| ||||||||||||||| ||||||||    
T  28227290 ggtaccgtagttcactcatgttttacattcttacatatgtcatacttctttaatattctattttctaactatttcatct 28227368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 28297660 - 28297523
Alignment:
Q  22 gagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatccta 121  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28297660 gagaagttccaaaataacaagaataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatccta 28297561  T
Q  122 ggtacctcacttcacttatgttttacattcttacatat 159  Q
    |||||| ||||||||| ||||||| |||||||| ||||    
T  28297560 ggtaccccacttcactcatgttttgcattcttaaatat 28297523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 28514413 - 28514550
Alignment:
Q  22 gagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatccta 121  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28514413 gagaagttccaaaataacaagaataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatccta 28514512  T
Q  122 ggtacctcacttcacttatgttttacattcttacatat 159  Q
    |||||| ||||||||| ||||||| |||||||| ||||    
T  28514513 ggtaccccacttcactcatgttttgcattcttaaatat 28514550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 28243041 - 28243239
Alignment:
Q  19 attgagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatc 118  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |     
T  28243041 attgagaagttccaaaatagcacggataacatggagaggttgcagaaatggaagagtgctctaactcaaacagctaacttctctggccaccatttcagtt 28243140  T
Q  119 ctaggtacctcacttcacttatgtt--------ttacattcttacatatatcacatttctttaattttctattttctaactgtttcatcttacaattga 209  Q
    ||||||||  ||||| ||| |||||        ||||||  ||||||||| |||||||||||||||||||||||||||||   ||||||||||| ||||    
T  28243141 ctaggtacaccacttaactcatgtttagcattcttacatagttacatataacacatttctttaattttctattttctaaccaattcatcttacagttga 28243239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 28181354 - 28181534
Alignment:
Q  22 gagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatccta 121  Q
    |||||||||||||||| |||| ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||    
T  28181354 gagaggttccaaaataacaagcatagcatggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccaccaaatcaatccta 28181453  T
Q  122 ggtacctcacttcacttatgttttacattcttacatatatcacatttctttaattttctattttctaactgtttcatctta 202  Q
    ||||||  | | |||| |||||||||||||  |||||  | | ||||||| ||| |||||||||| |||||||| ||||||    
T  28181454 ggtaccgtagtgcactcatgttttacattcaaacataggtgatatttcttgaatgttctattttcgaactgttttatctta 28181534  T

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Target: chr6; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 28325729 - 28325901
Alignment:
Q  34 aatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtacctcactt 133  Q
    ||||||| ||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| |||| |||| |  ||||    
T  28325729 aatagcacggatagcatggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccatttcagtcctgggtaacctactt 28325828  T
Q  134 cacttatgttttacattcttacatatatcacatttctttaattttctattttctaactgtttcatcttacaattga 209  Q
     ||| |||||||   |||||||||||||   |||||||||||||||||||||||||| | ||||||||||| ||||    
T  28325829 aactaatgttttgtgttcttacatatat---atttctttaattttctattttctaaccgattcatcttacagttga 28325901  T

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Target: chr6; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 28234808 - 28234968
Alignment:
Q  27 gttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtac 126  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||| ||||||||||||||||||||  |||||    
T  28234808 gttccaaaataacaaggataacatggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccatttcaatccagggtac 28234907  T
Q  127 ctcacttcacttatgttttacattcttacatatatcacatttctttaattttctattttct 187  Q
      || ||| || || |||| ||||| |||| |||| |  ||||||||||| ||||||||||    
T  28234908 accaattccctcatatttttcattcatacaaatataatgtttctttaattctctattttct 28234968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 27338007 - 27337921
Alignment:
Q  27 gttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccattt 113  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||||||  |||||||| ||| ||||||||||||| |||||||||||    
T  27338007 gttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccattt 27337921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 27398747 - 27398661
Alignment:
Q  27 gttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccattt 113  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||||||  |||||||| ||| ||||||||||||| |||||||||||    
T  27398747 gttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccattt 27398661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 26635939 - 26636035
Alignment:
Q  31 caaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtacc 127  Q
    |||||||||||||| ||||||||| |||||| |||||||||||  |||||||  ||| |||||||||| ||||||||||||||||||| | ||||||    
T  26635939 caaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtacc 26636035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 26741905 - 26742001
Alignment:
Q  31 caaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtacc 127  Q
    |||||||||||||| ||||||||| |||||| |||||||||||  |||||||  ||| |||||||||| ||||||||||||||||||| | ||||||    
T  26741905 caaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtacc 26742001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 26959415 - 26959511
Alignment:
Q  31 caaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtacc 127  Q
    |||||||||||||| ||||||||| |||||| |||||||||||  |||||||  ||| |||||||||| ||||||||||||||||||| | ||||||    
T  26959415 caaaatagcaaggaaaacatggagcggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtacc 26959511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 27214660 - 27214743
Alignment:
Q  22 gagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggc 105  Q
    |||||||| ||||||| |||||| ||||||||| ||||||||||||||||||  |||||||  ||| |||||||||| ||||||    
T  27214660 gagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggc 27214743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 27234568 - 27234485
Alignment:
Q  22 gagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggc 105  Q
    |||||||| ||||||| |||||| ||||||||| ||||||||||||||||||  |||||||  ||| |||||||||| ||||||    
T  27234568 gagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggc 27234485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 26617865 - 26617956
Alignment:
Q  25 aggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaa 116  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||  |||||||  ||| ||  |||||| |||||| | ||||||||    
T  26617865 aggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcatttcaa 26617956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 26723793 - 26723884
Alignment:
Q  25 aggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaa 116  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||  |||||||  ||| ||  |||||| |||||| | ||||||||    
T  26723793 aggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcatttcaa 26723884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 28098280 - 28098189
Alignment:
Q  46 aacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtacctcacttcact 137  Q
    |||||| ||||| |||| ||||||||||  |||||||  ||| | |||||||| || |||||||||||||||||||||||||  ||||||||    
T  28098280 aacatgaagaggctgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccatttcaatcctaggtaccatacttcact 28098189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 26937369 - 26937442
Alignment:
Q  45 taacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatc 118  Q
    ||||||||||||||||| |||||||||||  |||||||  ||| | || ||||| |||||||||||||||||||    
T  26937369 taacatggagaggttgcggaaatggaagatagctcttaaccaagcggcaaacttgtctggccaccatttcaatc 26937442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 26975320 - 26975397
Alignment:
Q  50 tggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtacc 127  Q
    ||||| ||||||  ||||||||||  |||||||  ||| |||||||||| ||||||||||||||||||| | ||||||    
T  26975320 tggagcggttgcttaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtacc 26975397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 26811754 - 26811809
Alignment:
Q  27 gttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctctta 82  Q
    ||||||||||| |||||| ||||||||  ||||||||||||||||||  |||||||    
T  26811754 gttccaaaataacaaggaaaacatggatcggttgcagaaatggaagatagctctta 26811809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 26861873 - 26861964
Alignment:
Q  42 ggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtacctcactt 133  Q
    ||||||||||||||||||||||| ||||||   |||||| |  ||| |||||||||| || ||| ||||||| | |||| |||||| |||||    
T  26861873 ggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccattttagtcctgggtaccccactt 26861964  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 26848909 - 26848995
Alignment:
Q  31 caaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaat 117  Q
    ||||||| |||||| | ||||||| | ||||  ||||||||||  |||||||  ||  |||||||||| ||||||||||||||||||    
T  26848909 caaaataacaaggaaagcatggagcgtttgcgtaaatggaagaaagctcttaaccatgctgctaacttatctggccaccatttcaat 26848995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 28139786 - 28139876
Alignment:
Q  27 gttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaat 117  Q
    ||||||||||   |||||| ||||||| |||||||  ||||||||  |||||||||   || | |||||||| ||||||||||||||||||    
T  28139786 gttccaaaatcaaaaggatgacatggataggttgctaaaatggaaatgtgctcttaacaaagcagctaacttttctggccaccatttcaat 28139876  T

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Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 28150235 - 28150281
Alignment:
Q  91 gctaacttctctggccaccatttcaatcctaggtacctcacttcact 137  Q
    |||||||| || ||||||||||||||||||||||| | |||||||||    
T  28150235 gctaacttgtccggccaccatttcaatcctaggtatcccacttcact 28150281  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 31284555 - 31284617
Alignment:
Q  49 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 111  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  31284555 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 31284617  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 26656234 - 26656319
Alignment:
Q  27 gttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 112  Q
    ||||||||||| |||||| |||||| |||||||| || |||||||||  ||||| ||  || |||| ||||| |||||| ||||||    
T  26656234 gttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccatt 26656319  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 26762205 - 26762290
Alignment:
Q  27 gttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 112  Q
    ||||||||||| |||||| |||||| |||||||| || |||||||||  ||||| ||  || |||| ||||| |||||| ||||||    
T  26762205 gttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccatt 26762290  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 28781380 - 28781469
Alignment:
Q  23 agaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 112  Q
    ||||||| ||||||   |||||||||||||||||||||||  ||||||||   ||||| || ||| |||||||||| || ||| ||||||    
T  28781380 agaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccatt 28781469  T

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Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 28786519 - 28786608
Alignment:
Q  23 agaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 112  Q
    ||||||| ||||||   |||||||||||||||||||||||  ||||||||   ||||| || ||| |||||||||| || ||| ||||||    
T  28786519 agaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccatt 28786608  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 28792640 - 28792729
Alignment:
Q  23 agaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 112  Q
    ||||||| ||||||   |||||||||||||||||||||||  ||||||||   ||||| || ||| |||||||||| || ||| ||||||    
T  28792640 agaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccatt 28792729  T

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Target: scaffold0019 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 58232 - 58053
Alignment:
Q  19 attgagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatc 118  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||     
T  58232 attgagaggttccaaaatagcaaggatagcatagagaggttgcagaaatggaagacagctcttactcagactgctaacttctctggccaccatttcaata 58133  T
Q  119 ctaggtacctcacttcacttatgttttacattcttacatatatcacatttctttaattttctattttctaactgtttcat 198  Q
    ||||||||| ||||| ||| ||||||||||||||||||||| ||| || |||||||| ||||||||| |||| |||||||    
T  58132 ctaggtaccccactttactcatgttttacattcttacatatgtcatatctctttaatattctattttataaccgtttcat 58053  T

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Target: scaffold0038 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 27688 - 27866
Alignment:
Q  22 gagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatccta 121  Q
    |||||||||||||||| |||| ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||    
T  27688 gagaggttccaaaataacaagcatagcatggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccaccaaatcaatccta 27787  T
Q  122 ggtacctcacttcacttatgttttacattcttacatatatcacatttctttaattttctattttctaactgtttcatct 200  Q
    ||||||  | |||||| ||||||||||||||||||||| ||| | ||||||||| ||||||||||||||| ||||||||    
T  27788 ggtaccgtagttcactcatgttttacattcttacatatgtcatacttctttaatattctattttctaactatttcatct 27866  T

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Target: scaffold0038; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 43203 - 43401
Alignment:
Q  19 attgagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatc 118  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |     
T  43203 attgagaagttccaaaatagcacggataacatggagaggttgcagaaatggaagagtgctctaactcaaacagctaacttctctggccaccatttcagtt 43302  T
Q  119 ctaggtacctcacttcacttatgtt--------ttacattcttacatatatcacatttctttaattttctattttctaactgtttcatcttacaattga 209  Q
    ||||||||  ||||| ||| |||||        ||||||  ||||||||| |||||||||||||||||||||||||||||   ||||||||||| ||||    
T  43303 ctaggtacaccacttaactcatgtttagcattcttacatagttacatataacacatttctttaattttctattttctaaccaattcatcttacagttga 43401  T

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Target: scaffold0038; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 117044 - 117216
Alignment:
Q  34 aatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtacctcactt 133  Q
    ||||||| ||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| |||| |||| |  ||||    
T  117044 aatagcacggatagcatggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccatttcagtcctgggtaacctactt 117143  T
Q  134 cacttatgttttacattcttacatatatcacatttctttaattttctattttctaactgtttcatcttacaattga 209  Q
     ||| |||||||   |||||||||||||   |||||||||||||||||||||||||| | ||||||||||| ||||    
T  117144 aactaatgttttgtgttcttacatatat---atttctttaattttctattttctaaccgattcatcttacagttga 117216  T

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Target: scaffold0038; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 34970 - 35130
Alignment:
Q  27 gttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtac 126  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||| ||||||||||||||||||||  |||||    
T  34970 gttccaaaataacaaggataacatggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccatttcaatccagggtac 35069  T
Q  127 ctcacttcacttatgttttacattcttacatatatcacatttctttaattttctattttct 187  Q
      || ||| || || |||| ||||| |||| |||| |  ||||||||||| ||||||||||    
T  35070 accaattccctcatatttttcattcatacaaatataatgtttctttaattctctattttct 35130  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 17993622 - 17993535
Alignment:
Q  31 caaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatc 118  Q
    |||||||||||||| ||||||||| |||||  |||||||||||  |||||||  ||| |||||||||| |||||||||||||||||||    
T  17993622 caaaatagcaaggaaaacatggagcggttgttgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatc 17993535  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 3279967 - 3280048
Alignment:
Q  46 aacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtacc 127  Q
    |||||| |||||||||| ||||||||||  |||||||  ||| | |||||||| || ||||||||||| |||||||||||||    
T  3279967 aacatgaagaggttgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccattttaatcctaggtacc 3280048  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 4292930 - 4292990
Alignment:
Q  204 aattgatgtaagtggcagtataatagatggcttgccatctatgcttctcacccttttcttt 264  Q
    |||||| |||||||| |||| || ||||||||||||||||||||||||||| |||||||||    
T  4292930 aattgaagtaagtggaagtagaaaagatggcttgccatctatgcttctcacacttttcttt 4292990  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 28164298 - 28164207
Alignment:
Q  21 tgagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 112  Q
    ||||||||||||||||| |||| | ||||||||| | |||||  |||||||||  ||||| || ||| |||||||||| || ||| ||||||    
T  28164298 tgagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccatt 28164207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 268291 - 268201
Alignment:
Q  22 gagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 112  Q
    ||||| ||||||||||||||| | ||||||||| |||||||  ||||||||   ||||| || ||| || ||||||| |||||| ||||||    
T  268291 gagagtttccaaaatagcaagaaaaacatggagcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccatt 268201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 28127613 - 28127523
Alignment:
Q  22 gagaggttccaaaatagcaaggataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 112  Q
    |||||||||||||||| |||| | ||||||||| | |||||  |||||||||  ||||| || ||| |||||||||| || ||| ||||||    
T  28127613 gagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccatt 28127523  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 5090874 - 5090792
Alignment:
Q  43 gataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggta 125  Q
    ||||| ||||||| ||||||||||||| |||  |||||||  ||| | ||||| || |||||| ||||||||||| |||||||    
T  5090874 gataatatggagaagttgcagaaatgggagatggctcttaagcaagcagctaatttgtctggctaccatttcaatgctaggta 5090792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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