View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_3 (Length: 651)
Name: NF8569_low_3
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Complemental strand, 55737279 - 55736647
Alignment:
| Q |
1 |
aaaagcatacaagaaaaacaatcgctaccggaaaagcaaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaagactcttccacattcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55737279 |
aaaagcatacaagaaaaacaatcgctaccggaaaagcaaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaagactcttccacattcc |
55737180 |
T |
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| Q |
101 |
aatcaatatcaaatttacacctgtccctgtcaaagtgctcattcctccaattggaaccgcataaaccactgtcagaaccaccgctctgctgaacttattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55737179 |
aatcaatatcaaatttacacctgtccctgtcaaagtgctcattcctccaattggaaccgcataaaccactgtcagaaccaccgctctgctgaacttattc |
55737080 |
T |
|
| Q |
201 |
accaactccgattgctctgacggtggtggcagccgctgtagcagccctgtggccaccggcatcaacatcacggcagctgccacgttgtgcatccacatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55737079 |
accaactccgattgctctgacggtggtggcagcctctgtagcagccctgtggccaccggcatcaacatcacggcagctgccacgttgtgcatccacatac |
55736980 |
T |
|
| Q |
301 |
tcacaaagaatgacgtgccacatagacccaataacaatagcgctggattcaacggttccccacaaaacactgatgtcaccttcaaacatcatatcattca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55736979 |
tcacaaagaatgacgtgccacatagacccaataacaatagcgctggattcaacggttccccacaaaacactgatgtcaccttcaaacatcatatcattca |
55736880 |
T |
|
| Q |
401 |
caaccaattataaaccttggtcggaaatatatatcattttcagttcacaataatcaaatttaaatgactcgttttttccacctcacagaatnnnnnnnga |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
55736879 |
caaccaattataaaccttggtcggaaatatatatcattttcagttcacaataatcaaatttaaatgactcgttttttccacctcacaaaataaaaaaaga |
55736780 |
T |
|
| Q |
501 |
atttaaccgtggtaggttcactgtccaaaacagttttgtacacacaatctatcaacccaccactattaaactcataaataaactctgtcattctaatcat |
600 |
Q |
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| T |
55736779 |
atttaaccgtggtgggttcacggtccaaaacagttttgtacacacaatcgatcaacccaccactattaaactcataaataaactctgtcattctaatcat |
55736680 |
T |
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| Q |
601 |
tcaaaaatatataatcatgtatacccatccaag |
633 |
Q |
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| T |
55736679 |
tcaaaaatatataatcatgtatacccatccaag |
55736647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 9378713 - 9378549
Alignment:
| Q |
37 |
caaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaagactcttccacattccaatcaatatcaaatttacacctgtccctgtcaaagt |
136 |
Q |
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||||||| ||||| | ||||| |||||||||||||| |||| |||| || |||||||||||||| | |||||| || |||||||| ||||| | ||| |
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| T |
9378713 |
caaagaaaaaccaagaattgaagcttattggttttgcttcaggggcaaggcttttccacattccaattattatcaagttcacacctgttcctgttagagt |
9378614 |
T |
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| Q |
137 |
gctcattcctccaattggaaccgcataaaccactgtcagaaccaccgctctgctgaacttattca |
201 |
Q |
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||| || ||||||||||| ||||| |||||||| |||| ||| ||||| |||||||| |||| |
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| T |
9378613 |
gcttatccctccaattggtgtagcatacaccactgttagaatcactgctctactgaacttgttca |
9378549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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