View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_32 (Length: 244)
Name: NF8569_low_32
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42214092 - 42213865
Alignment:
| Q |
1 |
aggattctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgctttatccaaaatccaatca |
100 |
Q |
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| T |
42214092 |
aggattctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgctttatccaaaatccaatca |
42213993 |
T |
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| Q |
101 |
ttgtcttcctcttcaaatttgagcaaggagttccaataacttggcgtgcccacatctgagatctcgcagaaagaatcgtgagagtagcttagaggagttg |
200 |
Q |
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| T |
42213992 |
ctgtcttcctcttcaaatttgagcaaggagttccaataacttggtgtacccacatctgagatctcgcagaaagaatcgtgagagtagcttagaggagttg |
42213893 |
T |
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| Q |
201 |
aagggttctcagatgtcattgaatctga |
228 |
Q |
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| T |
42213892 |
aagggttctcagatatcattgaatctga |
42213865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42207262 - 42207036
Alignment:
| Q |
1 |
aggattctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgctttatccaaaatccaatca |
100 |
Q |
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| T |
42207262 |
aggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgctttgtccaaaatccaatca |
42207163 |
T |
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| Q |
101 |
ttgtcttcctcttcaaatttgagcaaggagttccaataacttggcgtgcccacatctgagatctcgcagaaagaatcgtgagagtagcttagaggagttg |
200 |
Q |
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| T |
42207162 |
ctgtcttcctctttaagttttagcaagtagtcccggtaacttggtgtgcctatgtctgagatctcactaaaagaatcaccaatgtagcttagaggagttg |
42207063 |
T |
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| Q |
201 |
aagggttctcagatgtcattgaatctg |
227 |
Q |
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| T |
42207062 |
aaggattctcaggtgtcattgaatctg |
42207036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 42214287 - 42214066
Alignment:
| Q |
7 |
ctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgctttatccaaaatccaatcattgtct |
106 |
Q |
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|||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
42214287 |
ctcagagatcattgaatctgagagccatgcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgctttgtccaaaatccacacattgtct |
42214188 |
T |
|
| Q |
107 |
tcctcttcaaatttgagcaaggagttccaataacttggcgtgcccacatctgagatctcgcagaaagaatcgtgagagtagcttagaggagttgaagggt |
206 |
Q |
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| T |
42214187 |
tcctcttcaagtttgagcaaggagtcccagtaacttggcaagcctacgtctgagatcttgctgaaagaatcaccattgtagcttagaggactagaaggat |
42214088 |
T |
|
| Q |
207 |
tctcagatgtcattgaatctga |
228 |
Q |
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| T |
42214087 |
tctcagataccattgaatctga |
42214066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 42207445 - 42207353
Alignment:
| Q |
16 |
cattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgctttatccaaaatccaatcattgtcttc |
108 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||| |
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| T |
42207445 |
cattgaatctgagagccatgcagagtcttcctcttcaagacttagtaaagaatgcgtataacttgctctgtccaaaatccacacattgtcttc |
42207353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 42214405 - 42214267
Alignment:
| Q |
90 |
aaatccaatcattgtcttcctcttcaaatttgagcaaggagttccaataacttggcgtgcccacatctgagatctcgcagaaagaatcgtgagagtagct |
189 |
Q |
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| T |
42214405 |
aaatccactcattgtcttccttttcaagtctgagcaaggagtcccagtaactaggtgtgcctacatctgagatatcggtgaaagaaccaccattggagct |
42214306 |
T |
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| Q |
190 |
tagaggagttgaagggttctcagatgtcattgaatctga |
228 |
Q |
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| T |
42214305 |
tagaggactggaagggtcctcagagatcattgaatctga |
42214267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 42213887 - 42213812
Alignment:
| Q |
5 |
ttctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttg |
80 |
Q |
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|||||||||| |||||||||||| |||||| || ||||||||| ||||||||||| ||||| ||| |||||||| |
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| T |
42213887 |
ttctcagatatcattgaatctgagagccatccattgtcttcctcgtcaagacttagcaaagagtgcccgtaacttg |
42213812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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