View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_33 (Length: 242)
Name: NF8569_low_33
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 5129414 - 5129235
Alignment:
| Q |
1 |
ttaaacaatttcaattttttgcatgatgttgcttgagatgtcagatgatattataagcatcgtgtaacaacatacaaaataaagaatttaaggaaagcat |
100 |
Q |
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| T |
5129414 |
ttaaacaatttcaattttttgcatgatgttgcttgagatgtaagatgatattataagcatcgtgtcacaacatacaaaataaagaatttaaggaaagcat |
5129315 |
T |
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| Q |
101 |
gcttgaaaacacgaacactacatttatgaattactgtcttatcatttgtcagtnnnnnnngttggttgcaattatagtaa |
180 |
Q |
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| T |
5129314 |
gcttgaaaacacaaacactacatttatgaattactgtcttatcatttgtcagtaaaaaaagttggttgcaattatagtaa |
5129235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 5128535 - 5128501
Alignment:
| Q |
172 |
ttatagtaaaatacatgtataagttatagtagtgg |
206 |
Q |
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| T |
5128535 |
ttatagtaaaatacatgtataagttatagtagtgg |
5128501 |
T |
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